Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28230 257 / 2e-81 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G147500 [exp] 682 / 0 AT4G28230 249 / 2e-78 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018539 [exp] 318 / 2e-105 AT4G28230 232 / 1e-72 unknown protein Lus10039766 [exp] 305 / 2e-100 AT4G28230 234 / 2e-73 unknown protein Lus10033724 [exp] 224 / 9e-69 AT4G28230 210 / 6e-64 unknown protein Lus10031619 [exp] 215 / 3e-65 AT4G28230 206 / 2e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G116200.1 pacid=42774663 polypeptide=Potri.019G116200.1.p locus=Potri.019G116200 ID=Potri.019G116200.1.v4.1 annot-version=v4.1 ATGAGTAGTCTTCTTCAATACCCAGATGGGGTTGATGCCCCAGAAGTTCAAATATGGAACAATGCAGCGTTTGATAATGGAGAATCAGAGGATTCTTTGA ATCTTAAGTCTTCTTGGTGGACTCAAAGTCTTGAATCCAATGGAAGTAAAGAGAATCTTAGCCCAGTTTGTGAAAAATCATCTCCTGTTTTTGTCAATTC TTCAAACCCCACCAAGCCACTTCAATCAAATACCAATCTAGTTAACTCACTCGGGAGTAGTTCTTTGAAGATTGGGGTTTCTAAGATGGTGGCAAAGAAT GAAGAGATCAAGAATCGTGATGAGAAAAAGATTGATATGGAGATTGAAGAGATTGAGAGAGAGATTAAGCGTTTGTCTTCAAGACTCGAAGCACTTAGGC TTGAAAAGGTAGAGAGGAATATATCAAAGACTATTGAGAAGAGAGGGAGAATTGTGGCTGCAAAATTTATGGATCAGAAACAGAGTGTCAAGATTGAGGA ACCGTTGATCCCAAGTTCTAAATCGAAGATTAATAGAAGAGGAGTCAGTTTAGGGCCAAGTGAGATTTTATCCGGATCCAAATCAAGGTTATTCTGTGGG AAACAAGACATGAACACTCCTGTTTCGATTCAGAATCGGCGGAAATCTTGTTTTTGGAAGCTTGAAGAGATTGATGAATTAAAGGCAACTAAAGAGAGAG GAAAAAGCTTGAGTGTTAGTCCAAGATCGCGAAAAAATGTGTCCAAGATTCAATTTCCTAAACAGGCTGTTACTACTGTGGGGTCTAGAAGATCAGTGAA GAAAGAAGATGGGATTATTGCTTCAATTCAGCCGAAGAATCTATTCAAAGATGGAGAAAAATCTGTTACTAATAAGAAACCCTTGAAGCCCGGGCGGGTG GTGGCTAGTAGGTATAGTCAGATTGGAACAAATCAGTCTAATGGGAATCTAAGTGCTAGCGAGGCTCGAAAGAGGTCTTTGCCGGATAATGAGAAGGAAG ATGCCAATAAGAGGAGGGCTTCGCGAGGAAATGGGGCGTGTCAGAGAATGGACAGTGGTAGAGTGAAGAAGAAGTGGGAGATTCCAATTGAAGTAGTGGT GTATAAGGGTGATGATGAAGGCGAATCTCCGCCGACAGTTTCTACAGTGGCTGATGTGTTGCCAAAGATTAGGACTGTCAGGTGTGTTGCTGAGACTCCA AGGGATTCAGGGGCTGCGAAAAGAGTGGCTGATTTGGTTGGGAAGAAACCATTCTTTTGCATCGAGGAGGCTGAAGCAGGGGACTCTGTTTGTCAGGCTC TGAGTTTTGCAGGAGAGGATGGCGAGGAATAA
AA sequence Show only first row Show all	>Potri.019G116200.1 pacid=42774663 polypeptide=Potri.019G116200.1.p locus=Potri.019G116200 ID=Potri.019G116200.1.v4.1 annot-version=v4.1 MSSLLQYPDGVDAPEVQIWNNAAFDNGESEDSLNLKSSWWTQSLESNGSKENLSPVCEKSSPVFVNSSNPTKPLQSNTNLVNSLGSSSLKIGVSKMVAKN EEIKNRDEKKIDMEIEEIEREIKRLSSRLEALRLEKVERNISKTIEKRGRIVAAKFMDQKQSVKIEEPLIPSSKSKINRRGVSLGPSEILSGSKSRLFCG KQDMNTPVSIQNRRKSCFWKLEEIDELKATKERGKSLSVSPRSRKNVSKIQFPKQAVTTVGSRRSVKKEDGIIASIQPKNLFKDGEKSVTNKKPLKPGRV VASRYSQIGTNQSNGNLSASEARKRSLPDNEKEDANKRRASRGNGACQRMDSGRVKKKWEIPIEVVVYKGDDEGESPPTVSTVADVLPKIRTVRCVAETP RDSGAAKRVADLVGKKPFFCIEEAEAGDSVCQALSFAGEDGEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28230			unknown protein		Potri.019G116200 [exp]	0	1
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	2.44	0.9361
AT3G48210			unknown protein		Potri.015G080900 [exp]	2.44	0.9157
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	3.46	0.9296
AT1G48405			Kinase interacting (KIP1-like)...		Potri.012G038000 [exp]	4.58	0.8939
AT2G42110			unknown protein		Potri.016G045700 [exp]	5.47	0.8947
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	7.74	0.9140
					Potri.016G136300 [exp]	10.90	0.8700
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.019G040000 [exp]	13.07	0.8667
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	13.22	0.8985
AT4G31360			selenium binding (.1)		Potri.018G004901 [exp]	14.49	0.8620

Compare expression of checked genes

Potri.019G116200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.