Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20890 397 / 4e-140 PSB29, THF1 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G148400 [exp] 522 / 0 AT2G20890 416 / 1e-147 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018528 [exp] 405 / 3e-143 AT2G20890 363 / 1e-126 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1) Lus10039748 [exp] 395 / 3e-139 AT2G20890 364 / 5e-127 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11264 [poplar] [flax] ThylakoidFormat Thylakoid formation protein
Representative CDS sequence Show only first row Show all	>Potri.019G117900.1 pacid=42774572 polypeptide=Potri.019G117900.1.p locus=Potri.019G117900 ID=Potri.019G117900.1.v4.1 annot-version=v4.1 ATGGCTGCCGTTACTCCAGTATCATTCTCTGCGATTTCCCAATCTTCGAGCGACAGAAGGGCTTTCTGTACAGTAGCGCGTAATTTAGGTTTTGAAGGCT TCCGGTTTCGATCCAGTTTTTCGTGTCATTATGTCGGCGTTAGAGCTTCGAATTCGACTTCCCGTATGGTTATCCATTGCATGTCCACTTCTACTGATGT GCCACCAACGGTAGCTGATACCAAGTTGAATTTCTTGAAGGCTTATAAGAGACCGATCCCGAGTATCTATAACACGGTTCTGCAGGAGTTGATAGTGCAA CAACATTTGATGAAGTATAAGAAGACTTTCCGTTATGATCCTGTGTTTGGTCTTGGTTTTGTTACTGTGTATGATCAACTCATGGAAGGGTATCCGAGTG ATGAGGATCGAGAGGCCATTTTTCAGGCTTACATTAAGGCATTGGAGGAGGATCCGGAGCAATACAGAATAGATGCAAAAAAGCTTGAAGAATGGGCTCG GGCTCAGACTCCTAGTTCATTAGTTGACTTTTCATCCAGGGAAGGAGAAATTGAGGGGACATTAAAGGACATTGCAGAAAGAGTTGCGAGTGGGAATTTC AGCTACAGCCGTTTCTTTGCTGTTGGGTTATTTCGCCTTCTTGAGCTGTCAAATGCTAGTGAACCGACAGTACTAGAAAAGCTTTGTTCAGCACTAAACA TCAATAAAAGAAGTGTGGATCGGGACCTTGATGTATACCGGGGCCTTCTTTCTAAATTGGTTCAAGCAAGAGAGTTGCTGAAGGAGTATGTAGATAGGGA AAAGAAGAAACAAGAGGAACGTGCAGAATCACAGAAGGCTAGTGAGACTGTAACAAAATGTTTGGGAGAGCCTCAATTTGTAGGACAGTAG
AA sequence Show only first row Show all	>Potri.019G117900.1 pacid=42774572 polypeptide=Potri.019G117900.1.p locus=Potri.019G117900 ID=Potri.019G117900.1.v4.1 annot-version=v4.1 MAAVTPVSFSAISQSSSDRRAFCTVARNLGFEGFRFRSSFSCHYVGVRASNSTSRMVIHCMSTSTDVPPTVADTKLNFLKAYKRPIPSIYNTVLQELIVQ QHLMKYKKTFRYDPVFGLGFVTVYDQLMEGYPSDEDREAIFQAYIKALEEDPEQYRIDAKKLEEWARAQTPSSLVDFSSREGEIEGTLKDIAERVASGNF SYSRFFAVGLFRLLELSNASEPTVLEKLCSALNINKRSVDRDLDVYRGLLSKLVQARELLKEYVDREKKKQEERAESQKASETVTKCLGEPQFVGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.019G117900 [exp]	0	1
AT2G24090			Ribosomal protein L35 (.1)		Potri.018G102700 [exp]	3.60	0.9787
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Potri.004G053400 [exp]	4.00	0.9779	Pt-CHLI1.1
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.010G089400 [exp]	7.74	0.9765	PSAD1.1
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	8.00	0.9712
AT2G39730		RCA	rubisco activase (.1.2.3)		Potri.008G058500 [exp]	8.77	0.9715	RCA.2
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.002G047100 [exp]	9.16	0.9723
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.008G077400 [exp]	9.38	0.9704
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.014G175600 [exp]	12.04	0.9738	PSAL.2
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Potri.010G130800 [exp]	15.74	0.9614
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	16.24	0.9687	Lil3_3,Pt-LIL3.1

Compare expression of checked genes

Potri.019G117900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.