Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03940 339 / 3e-112 HXXXD-type acyl-transferase family protein (.1) AT1G03495 325 / 6e-107 HXXXD-type acyl-transferase family protein (.1) AT3G29670 249 / 1e-77 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G61160 229 / 4e-70 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39090 221 / 5e-67 HXXXD-type acyl-transferase family protein (.1) AT3G29680 210 / 1e-62 HXXXD-type acyl-transferase family protein (.1) AT3G29635 208 / 8e-62 HXXXD-type acyl-transferase family protein (.1) AT5G39050 204 / 4e-60 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G39080 201 / 6e-59 HXXXD-type acyl-transferase family protein (.1) AT3G29590 187 / 5e-54 AT5MAT HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118000 [exp] 828 / 0 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 365 / 2e-122 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 262 / 2e-82 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 259 / 5e-81 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 251 / 6e-78 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.017G094700 [exp] 248 / 4e-77 AT5G39080 315 / 8e-103 HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 243 / 6e-75 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 242 / 2e-74 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 241 / 2e-74 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033754 [exp] 426 / 5e-146 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10031587 [exp] 421 / 3e-144 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 418 / 3e-143 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 399 / 5e-134 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10039746 [exp] 353 / 1e-117 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039745 [exp] 320 / 2e-104 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 228 / 3e-69 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 218 / 3e-65 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 214 / 8e-64 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 214 / 9e-64 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.019G118101.1 pacid=42773753 polypeptide=Potri.019G118101.1.p locus=Potri.019G118101 ID=Potri.019G118101.1.v4.1 annot-version=v4.1 ATGGCTCATTCTCATCCTGTAAAACTCATTGATCATTTCCGAGTCTCTCCACCACTAGGCTCAGTACCCACCACCTCTCTACCTCTCACTTTCTTCGACT TTCCATGGCTTCTTTGCCGTCCCATGGAACGCCTTTTCTTCTATGAATTCCCTTACCCTACTCTTTACTTGACGAACAACATCCTTCCTATTCTTAAAAA CTCTCTTTCCCTTACTCTTCAACACTTTTTCCCTCTTGCCTCCAATCTTATGTGCCCACCATCACCCCATAAACCCTATATCCTCTTCAAAGATGGTGAC TCGATCCCGTTCACTGTTGTTGAGTCAATGCTGGATTTTGACCAAGTCATCGGAGACCATGCCAGAGTCGATCTTAGAGAACTGCAATGTTTTGTCCCCA AGTGGCCTCCCACACGTGTGACATCAGATGACACACGTGTAGTGCCACTTCTTGCCTTGCAAGTAGCTGTGTTTCCGAATTCAGGTATCTGCATCGGTGC CAAATTTTGCCACGTGGTAGCTGATGGGATGGCTTTTAGCCATTTCATGAAATCCTGGGCGTCCATTTTTAGGTCCAGAGAAGACAGCGCTTGCCTTGAA AAGTCAATACCGCCGTCTCATGACAGGTCAGGGATCAAAGACCCATTCGAGCTTGAGTCAATTTTTACAAAGGACTGGTGGAATTGGGCTTCATCTTGGG ATTACGATTTGGGATCAACCCCTGATGATCAACTTAGAGACAAGGTTGGCGTCACATTTACGATAGGCCAAACCCACATTGAGAGGCTGAAAGATCTGGT GTCCATTCAATGCATGGAAAATTATCCAGGGCAAGTGCATGTATCAACATTTGTGGTAGCATGTGCCTTTACATGGGTTAATTTGATCAAGTCACAAGAG AAGGAGGCAAGTGATTTACTTGATAATGACAAGGTTTACTACTTCGTTTTTGTGGCAGATTGTAGACACCGTCCTGAAGTTAAACTACCAGCAACATATT TTGGAAACTGTCTAGCAATATGTTATGTTCCTGCAAAGAAGATTGAGTTACTTGGAGAAAATGGGATCATCATGGCAGCTAGAGAAATTGGTAAGAAGGT CAAGGAATTGGAGAGTGGGGTTTTTGTGGGGGCTGAGAAATGGATATCAAAGTGGAAAGAAGTGTCTGAACAAGGCAGGCTGGTTACTGTTGCTGGGTCA CCTAAGTTGCGTGCTTACGAGACAGATTTTGGGTGGGGGAGGCCGAAAAAGACTGAGGTTCCCCATATTTATGCTTCAGGCAGTTTCCATCTTTGTGAAT GTAGAGATGGGGGAGGAGGAGTTGAGATTGGCTTGGCGCTTCCTCAGGGTCAAATGGATGTCTTCTCTGGCATCTTTGAACAAGGTAAGCAGAATCTGAT TTGA
AA sequence Show only first row Show all	>Potri.019G118101.1 pacid=42773753 polypeptide=Potri.019G118101.1.p locus=Potri.019G118101 ID=Potri.019G118101.1.v4.1 annot-version=v4.1 MAHSHPVKLIDHFRVSPPLGSVPTTSLPLTFFDFPWLLCRPMERLFFYEFPYPTLYLTNNILPILKNSLSLTLQHFFPLASNLMCPPSPHKPYILFKDGD SIPFTVVESMLDFDQVIGDHARVDLRELQCFVPKWPPTRVTSDDTRVVPLLALQVAVFPNSGICIGAKFCHVVADGMAFSHFMKSWASIFRSREDSACLE KSIPPSHDRSGIKDPFELESIFTKDWWNWASSWDYDLGSTPDDQLRDKVGVTFTIGQTHIERLKDLVSIQCMENYPGQVHVSTFVVACAFTWVNLIKSQE KEASDLLDNDKVYYFVFVADCRHRPEVKLPATYFGNCLAICYVPAKKIELLGENGIIMAAREIGKKVKELESGVFVGAEKWISKWKEVSEQGRLVTVAGS PKLRAYETDFGWGRPKKTEVPHIYASGSFHLCECRDGGGGVEIGLALPQGQMDVFSGIFEQGKQNLI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118101 [exp]	0	1
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118000 [exp]	3.46	0.8556
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Potri.014G086300 [exp]	5.91	0.7487
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.002G086000 [exp]	6.24	0.7197
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052232 [exp]	6.32	0.7453
					Potri.006G037801 [exp]	13.11	0.7526
AT5G57970			DNA glycosylase superfamily pr...		Potri.001G044402 [exp]	13.22	0.7515
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.013G085700 [exp]	14.49	0.6388
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166000 [exp]	15.29	0.7348
AT1G32928			unknown protein		Potri.011G151600 [exp]	17.02	0.7254
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052100 [exp]	17.32	0.6658

Compare expression of checked genes

Potri.019G118101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.