Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28100 409 / 2e-144 unknown protein AT3G18050 196 / 1e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G148700 [exp] 518 / 0 AT4G28100 377 / 8e-132 unknown protein Potri.015G040900 [exp] 203 / 3e-63 AT3G18050 347 / 2e-119 unknown protein Potri.012G049000 [exp] 201 / 2e-62 AT3G18050 352 / 2e-121 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039742 [exp] 416 / 9e-147 AT4G28100 399 / 2e-140 unknown protein Lus10018524 [exp] 414 / 4e-146 AT4G28100 397 / 1e-139 unknown protein Lus10027253 [exp] 207 / 9e-65 AT3G18050 306 / 2e-103 unknown protein Lus10038961 [exp] 202 / 7e-63 AT3G18050 308 / 6e-104 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G118300.1 pacid=42773906 polypeptide=Potri.019G118300.1.p locus=Potri.019G118300 ID=Potri.019G118300.1.v4.1 annot-version=v4.1 ATGCAAACTTTACTCACAATATTCCTCTTTACTTCTTTATTCACTCACTCTCTTTCAAGCTTCCTATCTGAGCCAGTCTCTGGCCAAAACCAGCCTCTAA AACCAGGAGACTATTCAAACCCCAACACAGTCCCCGCGTTTCCAGTCCAAACTGAGTCTCAAATTTGCCACTTGGACCTTTCAGCTGAGCTTTTTGGTGG TGTAAATGATGCATGTGGTAGAGACCTTGACCGTAGCCGGTGCTGTCCAGTTCTTGCAGCTTGGCTCTTTGCAGCTCATGCAAGGTCAGCCCTCCAAGTC CAAGCTCCAGCCCCAACATCAGCACCTGATTTGCCAATGATGCCTGATGATTCACAAAAATGTGTGAATTCATTACAAAGTGCACTTTTGAGTAAAAATG TGAAGTTGGCACAACCTAATGCTAGCTGTGATGCTATATTGTGTTTTTGTGGGATTAGGCTTCATCAGATTAGTTCACTTAGTTGTCCTGCTGCTTTTAA TGTGAGTTCTGCGTTTCATAATGCAACTCCTACTGCTGCTGTAAAGAATTTGGAGAAGAATTGTAAGAATTCCACTTATTCAGGGTGTACAAAGTGCCTT GGTGCTCTCCAAAAGTTGAAGGCCAAGAATGAAACACAAGACAAGAGCACAAGGGATGAGAGGGCAAGCAAAATGTTCGAAAGGGATTGCCAACTAATGG GTCTAACATGGCTACTTGCAAGAAACAAAACTCAGTACATCCCCACAGTTTCTGCTGTTTTAAGAGCCATAATGTATAGCACACACCCACCAGTCCATGA ATCCAAGTGTAGCCCTGATCAAGAAAACATGCCATTGGCTGTTGATTCGCTACAGTTCGGGAAGGCCCAGTCATCATCTTCTTCAAGACTAACATCATCG TCATCATTATGGTCTGGTCTTCGTTTCCATGTTTTGCCCCTCATGATTTTAGTTTCTTTGTTTGGATAA
AA sequence Show only first row Show all	>Potri.019G118300.1 pacid=42773906 polypeptide=Potri.019G118300.1.p locus=Potri.019G118300 ID=Potri.019G118300.1.v4.1 annot-version=v4.1 MQTLLTIFLFTSLFTHSLSSFLSEPVSGQNQPLKPGDYSNPNTVPAFPVQTESQICHLDLSAELFGGVNDACGRDLDRSRCCPVLAAWLFAAHARSALQV QAPAPTSAPDLPMMPDDSQKCVNSLQSALLSKNVKLAQPNASCDAILCFCGIRLHQISSLSCPAAFNVSSAFHNATPTAAVKNLEKNCKNSTYSGCTKCL GALQKLKAKNETQDKSTRDERASKMFERDCQLMGLTWLLARNKTQYIPTVSAVLRAIMYSTHPPVHESKCSPDQENMPLAVDSLQFGKAQSSSSSRLTSS SSLWSGLRFHVLPLMILVSLFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28100			unknown protein		Potri.019G118300 [exp]	0	1
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.008G156100 [exp]	1.00	0.7894	TSO1.2
AT4G22730			Leucine-rich repeat protein ki...		Potri.001G117800 [exp]	7.48	0.7524
AT3G27200			Cupredoxin superfamily protein...		Potri.016G015200 [exp]	43.68	0.6811
AT5G26960			Galactose oxidase/kelch repeat...		Potri.009G066500 [exp]	49.59	0.5665
AT4G34880			Amidase family protein (.1)		Potri.009G130400 [exp]	56.49	0.6522
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.015G060000 [exp]	56.56	0.6587
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.013G056000 [exp]	56.70	0.6325
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Potri.005G190500 [exp]	70.35	0.6518
AT2G33390			unknown protein		Potri.008G170700 [exp]	72.12	0.5472
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.003G106400 [exp]	74.61	0.6682

Compare expression of checked genes

Potri.019G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.