Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PETC.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03280 318 / 4e-111 PGR1, PETC PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) AT5G13430 52 / 9e-08 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) AT5G13440 52 / 1e-07 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G148900 [exp] 404 / 6e-145 AT4G03280 311 / 3e-108 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Potri.003G162200 [exp] 52 / 5e-08 AT5G13430 417 / 8e-149 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Potri.001G067900 [exp] 51 / 1e-07 AT5G13430 413 / 4e-147 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018521 [exp] 343 / 3e-121 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Lus10039739 [exp] 343 / 7e-121 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Lus10028416 [exp] 51 / 4e-08 AT5G13440 265 / 3e-91 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10031982 [exp] 52 / 7e-08 AT5G13430 379 / 4e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10035118 [exp] 52 / 7e-08 AT5G13430 379 / 8e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10041870 [exp] 52 / 7e-08 AT5G13430 378 / 1e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10041513 [exp] 52 / 7e-08 AT5G13430 376 / 9e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10012580 [exp] 52 / 8e-08 AT5G13430 373 / 2e-131 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [poplar] [flax] ISP-domain PF00355 [poplar] [flax] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Potri.019G118500.1 pacid=42774552 polypeptide=Potri.019G118500.1.p locus=Potri.019G118500 ID=Potri.019G118500.1.v4.1 annot-version=v4.1 ATGGCTTCCTCTACGCTCTCCCCTGCCACTCCCTCACAGCTATGCTCTAGCAAGAGTGGCATGTTCTCTCCTACACATGCGGTGTTTGTGAAACCAACAA GGACAAATATGGTGTTAAAGGAGAGAGGAATGAGAATTTCATGCCAGGCTACAAGTGTTCCTGCTGATGATAGAGTGCCTGACATGGGTAAGAGGGAGCT TATGAATCTGCTTCTTTTGGGTGCTCTTTCACTCCCCACTGCTGGCATGTTGGTTCCTTACACCTATTTCTTTGTCCCTACTGGGCTCGGAGGAGGTGGT GGTGGTACCGTTGCCAAGGATGCCCTTGGAAATGATATCGTTGCAGAGCAATGGCTTAACACTCATGGCCCTGGTGACCGAACCCTTTCTCAAGGATTGA AGGGAGATCCAACCTACCTTGTTGTGGAGAAAGATAGAGTTCTTGCAACTTATGGAATTAATGCAGTCTGCACACACCTTGGGTGTGTCGTGCCCTGGAA TCAAGCTGAGAAGAAGTTCATCTGCCCCTGCCATGGATCACAGTACAATGACCAAGGAAGAGTTGTCCGAGGACCTGCTCCTCTGTCATTGGCACTGGCT CACTGCGACGTAGACGACGGCAAGGTGGTCTTTGTTCCATGGGTTGAAACAGATTTCAGAACCGGAGATGCTCCATGGTGGTCTTAA
AA sequence Show only first row Show all	>Potri.019G118500.1 pacid=42774552 polypeptide=Potri.019G118500.1.p locus=Potri.019G118500 ID=Potri.019G118500.1.v4.1 annot-version=v4.1 MASSTLSPATPSQLCSSKSGMFSPTHAVFVKPTRTNMVLKERGMRISCQATSVPADDRVPDMGKRELMNLLLLGALSLPTAGMLVPYTYFFVPTGLGGGG GGTVAKDALGNDIVAEQWLNTHGPGDRTLSQGLKGDPTYLVVEKDRVLATYGINAVCTHLGCVVPWNQAEKKFICPCHGSQYNDQGRVVRGPAPLSLALA HCDVDDGKVVFVPWVETDFRTGDAPWWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	0	1	PETC.1
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	1.00	0.9885
AT1G44920			unknown protein		Potri.002G114900 [exp]	1.73	0.9861
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Potri.003G113500 [exp]	2.00	0.9859
AT1G64680			unknown protein		Potri.001G083300 [exp]	2.00	0.9871
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	2.44	0.9836
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.009G047700 [exp]	3.87	0.9843
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Potri.002G083500 [exp]	5.29	0.9835	NPQ4.1
AT3G01060			unknown protein		Potri.017G090100 [exp]	5.47	0.9818
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.015G078100 [exp]	6.00	0.9756
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.010G089400 [exp]	6.00	0.9819	PSAD1.1

Compare expression of checked genes

Potri.019G118500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.