Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03270 244 / 2e-79 CYCD6;1 Cyclin D6;1 (.1) AT5G65420 125 / 1e-33 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT1G70210 118 / 1e-30 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G10440 110 / 7e-28 CYCD4;2 cyclin d4;2 (.1) AT5G67260 108 / 9e-27 CYCD3;2 CYCLIN D3;2 (.1) AT2G22490 106 / 3e-26 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT4G34160 92 / 6e-21 CYCD3;1 CYCLIN D3;1 (.1) AT3G50070 84 / 6e-18 CYCD3;3 CYCLIN D3;3 (.1) AT4G37630 73 / 2e-14 CYCD5;1 cyclin d5;1 (.1.2) AT1G44110 49 / 2e-06 CYCA1;1 Cyclin A1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149000 [exp] 526 / 0 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.011G040900 [exp] 306 / 1e-103 AT4G03270 213 / 1e-67 Cyclin D6;1 (.1) Potri.004G032100 [exp] 293 / 2e-98 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.011G040500 [exp] 241 / 5e-79 AT4G03270 178 / 7e-55 Cyclin D6;1 (.1) Potri.002G103500 [exp] 147 / 2e-41 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.008G146600 [exp] 127 / 5e-34 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.005G157800 [exp] 126 / 1e-33 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.010G095200 [exp] 122 / 3e-32 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.002G119000 [exp] 108 / 4e-27 AT4G37630 119 / 4e-31 cyclin d5;1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039738 [exp] 274 / 2e-90 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1) Lus10033736 [exp] 270 / 1e-88 AT4G03270 221 / 5e-70 Cyclin D6;1 (.1) Lus10031608 [exp] 230 / 2e-73 AT4G03270 211 / 4e-66 Cyclin D6;1 (.1) Lus10018520 [exp] 218 / 4e-69 AT4G03270 163 / 4e-48 Cyclin D6;1 (.1) Lus10018411 [exp] 172 / 2e-51 AT4G03270 152 / 4e-44 Cyclin D6;1 (.1) Lus10002587 [exp] 166 / 3e-49 AT4G03270 169 / 8e-51 Cyclin D6;1 (.1) Lus10029194 [exp] 125 / 2e-33 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 125 / 7e-33 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10011507 [exp] 94 / 1e-21 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 92 / 6e-21 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G118600.1 pacid=42774621 polypeptide=Potri.019G118600.1.p locus=Potri.019G118600 ID=Potri.019G118600.1.v4.1 annot-version=v4.1 ATGGATTTTAATCTTGAAAACCCATTAACAAATTCTCATGAGCTTCACTTTGACACAACCCCTTCTCTCTTCCTCATTGAATCTGACCACATGCCTTCAA AGAACTACTTAAAGACCCTCAAAGAGATAGACTTTGATGTCTCTTTTAGAAGAGAAGCCATCTCTTCTGTCTTAAGGGTTTCTTGCAACTTCGATCCGTC CTTGTCCTATCTTGCTGTTAATTACCTCGATAGGTTCTTATCGAGCCAAGGAATTCCTCAACCAAAGCCATGGGTCTTTAAGCTTCTCGCAGTTGCTTGT GTCTCTCTAGCAGCCAAAATGAAGGAAGCAGAATTCTATGTCACTGATATTCAGGGTGATGGTGGTTTTGTATTTGACCCTCAAACAATACAAAAGATGG AGGTGCTTATACTTGGGGCTTTAAATTGGAGGATGAGATCAATCACGCCATTCTCCTTCATTTCTTTTTTCATTTCTTTGTTCAAACCTAAAGATCCACC ATTGAGGCAGGCTCTTAAAGCTAGAGCTTGTGAAATCATCTTCAAAGCTCAAAATGATATCAATCTTTTGGAGTTCAGGCCATCATTAACTGCTGCTTCA GCACTTCTCTATGCTTGTCATGAACTTTTTCCTATGCAGTTTTTATGCTTTAGAAAAGCCATATCCATCTGCTCATATGTAAATAAGGAAAACTTGTTGC AATGCTATAATGCAATGCAAGAAACAGCAATGGATGGTTACAAGTCACAATTTGACATGGTGTCAAGTTCTGATACGCCAGTCAACGTGCTTGACCGGCA CTTTTCAAGCTCAGAAAGTGAAAACACCAATGGGACTGTTGTGATGATATCTAGCAATGGCAGCAACAAAACCTGGCCAGAGAAAGGCATCAAGAGAAGA AAGATCAGTGCTCTCTGTAATAATCAAACGGTTCAGTTTTCAGCTTTCTCAGATGCAACAACTATGCTGATGTGA
AA sequence Show only first row Show all	>Potri.019G118600.1 pacid=42774621 polypeptide=Potri.019G118600.1.p locus=Potri.019G118600 ID=Potri.019G118600.1.v4.1 annot-version=v4.1 MDFNLENPLTNSHELHFDTTPSLFLIESDHMPSKNYLKTLKEIDFDVSFRREAISSVLRVSCNFDPSLSYLAVNYLDRFLSSQGIPQPKPWVFKLLAVAC VSLAAKMKEAEFYVTDIQGDGGFVFDPQTIQKMEVLILGALNWRMRSITPFSFISFFISLFKPKDPPLRQALKARACEIIFKAQNDINLLEFRPSLTAAS ALLYACHELFPMQFLCFRKAISICSYVNKENLLQCYNAMQETAMDGYKSQFDMVSSSDTPVNVLDRHFSSSESENTNGTVVMISSNGSNKTWPEKGIKRR KISALCNNQTVQFSAFSDATTMLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.019G118600 [exp]	0	1
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057800 [exp]	2.23	0.9131	Pt-CCR.6
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Potri.019G054400 [exp]	8.71	0.8885
AT3G63170			Chalcone-flavanone isomerase f...		Potri.002G052200 [exp]	21.16	0.8465
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.012G105300 [exp]	21.70	0.8695
AT4G15510			Photosystem II reaction center...		Potri.013G006500 [exp]	24.41	0.8650
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.012G106000 [exp]	35.32	0.8470	ICE1.2
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	38.53	0.8644	Pt-GSA1.1
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Potri.017G015800 [exp]	39.19	0.8388
AT1G48910		YUC10	YUCCA 10, Flavin-containing mo...		Potri.002G207400 [exp]	45.92	0.8038
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Potri.003G182000 [exp]	50.26	0.7963

Compare expression of checked genes

Potri.019G118600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.