Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 873 / 0 S-locus lectin protein kinase family protein (.1) AT4G00340 513 / 1e-170 RLK4 receptor-like protein kinase 4 (.1) AT4G11900 472 / 3e-154 S-locus lectin protein kinase family protein (.1) AT4G21380 440 / 6e-142 ARK3 receptor kinase 3 (.1) AT1G11350 439 / 6e-142 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G21390 436 / 2e-140 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 431 / 1e-138 S-locus lectin protein kinase family protein (.1) AT4G27290 422 / 1e-135 S-locus lectin protein kinase family protein (.1) AT1G11330 409 / 3e-130 S-locus lectin protein kinase family protein (.1.2) AT1G11340 404 / 9e-128 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121000 [exp] 1279 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 1269 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 580 / 0 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.005G014700 [exp] 560 / 0 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 558 / 0 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 549 / 0 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 478 / 5e-157 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 465 / 1e-151 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 462 / 1e-150 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042266 [exp] 867 / 0 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 805 / 0 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 749 / 0 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 719 / 0 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 681 / 0 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039762 [exp] 643 / 0 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 641 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 617 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039767 [exp] 534 / 5e-178 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 540 / 2e-172 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G119200.1 pacid=42774238 polypeptide=Potri.019G119200.1.p locus=Potri.019G119200 ID=Potri.019G119200.1.v4.1 annot-version=v4.1 ATGGATGTCAGAAACAATCCATGGATCATGCCTTTTGTTATTTTCTTATGCTTTTCTCTCAAGCCCCATGTCTCCCTTGGAGCTGATACAATCTCTGCAA ACAGCTCTCTTTCTGGAGACCAAACTGTTGTCTCAGCAGGAAAAGTCTTCGAACTTGGTTTCTTCAAGCCAGGTAACTCCTCAAACTACTACATAGGCAT GTGGTATTATAGAGATAAGGTGTCTGCACAGACCATAGTTTGGGTGGCAAACAGAGAGACACCTGTTTCTGATAGATTTTCTTCGGAGTTAAGAATATCT GATGGGAATTTAGCTCTCTTTAATGAGTCCAAGATCCTAATTTGGTCCACAAATTTGAGCTCTAGTAGCTCTAGATCTGTGGAAGCAGTACTTGGTAATG ATGGAAATCTAGTTTTGAGAGATAGGTCTAATCCATCATTGTCACCACTATGGCAGTCTTTTGATTTTCCAGCTGATACATGGCTGCCTGGTGCTAAGGT TGGATTGAGCAAAATCAACAATAGGAACACACGTCTCATTTCATGGAAAAGCAAAGATAATCCTGCACCGGGTCTTTTCTCTCTTGAGCTAGACCCAAAT CAGAGTCAATATTTGATCTTCTGGAAGAGGTCTATACAGTATTGGACTAGTGGAGAATGGAATGGACAGATTTTCAGCTTAGTTCCTGAAATGAGATTGA ATTATATCTACAACTTTAGTTATGTTAGCAATGATAATGAGAGCTATTTCACCTATTCAATGTACAACAGTACAGTCATATCTCGGTTTGTGATGGATGA TGGCGGGCAGATTCAACAGCAAACATGGTCGGCGAGTACCAACGCATGGTTTTTGTTCTGGTCTCAACCAAAGACGCAATGTGAGGTGTATGCTTACTGT GGGGCTTTTGGAAGCTGTAATGCGAAATCACAGCCTTTCTGCGACTGCCCGAGAGGTTTCAACCCGAATTCGACGGGGGACTGGTATTCGGAGGTTTTTT CTGGGGGATGTGAGAGGGCAACAAATCTGCAGTGTGGGAATTCTAGTGTTGTTAATGGGAAGAGTGACAGATTTTTCCCAAGTTACAATATGAAGTTGCC TGCAAATCCACAGATAGTGGCAGCTGGGAGTGCACAGGAATGTGAATCAACTTGCTTGAAGAATTGTTCTTGTACTGCCTATGCTTTTGATGGTGGTCAG TGCTCAGCTTGGTCCGGCGATCTATTGAACATGCAGCAACTTGCAGATGGCACAGATGGAAAATCTATCTATATCAGGCTTGCAGCTTCTGAGTTTTCAA GTTCTAAGAATAATAAAGGAATAGCTATTGGCGGTGTTGTGGGCTCAGTGGCGATAGTGTCTATCCTTGCCCTTGTTCTGTTCATATTCTTGAGAAGGAG AAAAACAGTCAAAATGGGCAAAGCAGTAGAGGGTTCACTGATGGCTTTTGGATACAGAGATTTACAAAGTGCGACGAAGAATTTCTCTGAGAAACTGGGG GGAGGAGGTTTTGGTTCTGTTTTCAAAGGGTTGTTGCCTGATACTAGTGTCATAGCTGTGAAGAAGCTTGATAGCATCAGCCAAGGAGAGAAGCAATTCC GCTCAGAAGTCAGCACTATCGGGACAATCCAGCACGTCAATCTGGTTCGCCTTCGTGGGTTCTGCTCAGAGGGAAATAAGAAGCTGTTGGTCTATGACTA CATGCCGAATGGTTCTCTTGATTCCCTTCTTTTCAGTGAGAAAAACACAAAGGTCTTAGACTGGAAAACTAGGTACAGTATTGCTTTGGGGACAGCTAGA GGATTGAACTATCTCCATGAGAAATGCAGGGACTGTATCATACACTGCGATATAAAGCCTGAGAACATCCTTTTAGATGCTCAGTTTTGCCCAAAAGTGG CTGATTTTGGCCTGGCAAAGCTCGTCGGCCGGGATTTTAGCAGGGTGCTGACAACCATGAGAGGTACAAGAGGCTATCTAGCTCCAGAGTGGATTTCAGG AGTGGCTATAACAGCCAAAGCAGACGTTTACAGTTATGGAATGATGATTTTTGAAGTTGTATCAGGAAGGAGAAACTCTGAGCAATCTGAAGATGGGAAA GTGAAGTTCTTCCCAAGTTATGCTGCAAGCCAAATCAATCAAGAGTACGGTGACATCCTTAGCTTGTTGGACCACAGGTTGGAGGGGGATGCTGATCTTG AAGAGCTAACAAGAGTCTGTAAAGTTGCTTGCTGGTGCATCCAAGATGAAGAAACCCAAAGGCCATCAATGGGCCACGTAGTTCAGATCCTCGAAGGGGT TGTGAGCGTGAATCCACCTCCAACTCCAAGATGTCTCCAAGTGTTTGACAGCCAGGAGAGCATAATTTTCTTCACAGAATCATCTTCTAGCCAAAGTTCA CAGGCACAGAGCCACACCTCAACTGCTTCTACTCAGACTAAGAACACCACATCAAACAAAAGTCCCAAGTCTTAA
AA sequence Show only first row Show all	>Potri.019G119200.1 pacid=42774238 polypeptide=Potri.019G119200.1.p locus=Potri.019G119200 ID=Potri.019G119200.1.v4.1 annot-version=v4.1 MDVRNNPWIMPFVIFLCFSLKPHVSLGADTISANSSLSGDQTVVSAGKVFELGFFKPGNSSNYYIGMWYYRDKVSAQTIVWVANRETPVSDRFSSELRIS DGNLALFNESKILIWSTNLSSSSSRSVEAVLGNDGNLVLRDRSNPSLSPLWQSFDFPADTWLPGAKVGLSKINNRNTRLISWKSKDNPAPGLFSLELDPN QSQYLIFWKRSIQYWTSGEWNGQIFSLVPEMRLNYIYNFSYVSNDNESYFTYSMYNSTVISRFVMDDGGQIQQQTWSASTNAWFLFWSQPKTQCEVYAYC GAFGSCNAKSQPFCDCPRGFNPNSTGDWYSEVFSGGCERATNLQCGNSSVVNGKSDRFFPSYNMKLPANPQIVAAGSAQECESTCLKNCSCTAYAFDGGQ CSAWSGDLLNMQQLADGTDGKSIYIRLAASEFSSSKNNKGIAIGGVVGSVAIVSILALVLFIFLRRRKTVKMGKAVEGSLMAFGYRDLQSATKNFSEKLG GGGFGSVFKGLLPDTSVIAVKKLDSISQGEKQFRSEVSTIGTIQHVNLVRLRGFCSEGNKKLLVYDYMPNGSLDSLLFSEKNTKVLDWKTRYSIALGTAR GLNYLHEKCRDCIIHCDIKPENILLDAQFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMIFEVVSGRRNSEQSEDGK VKFFPSYAASQINQEYGDILSLLDHRLEGDADLEELTRVCKVACWCIQDEETQRPSMGHVVQILEGVVSVNPPPTPRCLQVFDSQESIIFFTESSSSQSS QAQSHTSTASTQTKNTTSNKSPKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19130			S-locus lectin protein kinase ...		Potri.019G119200 [exp]	0	1
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	1.73	0.9191	Pt-ATCNGC19.3
AT1G36310			S-adenosyl-L-methionine-depend...		Potri.002G091300 [exp]	4.24	0.8968
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	5.29	0.9067
AT2G47390			Prolyl oligopeptidase family p...		Potri.002G196000 [exp]	5.47	0.8925
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	5.65	0.8954
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	7.00	0.8886
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.005G051700 [exp]	7.21	0.8744
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.001G408200 [exp]	8.12	0.8897
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.001G334700 [exp]	8.48	0.8842
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	9.79	0.8886	Pt-ATMRP14.3

Compare expression of checked genes

Potri.019G119200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.