Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11360 162 / 6e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT5G54430 145 / 2e-42 ATPHOS32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G27320 140 / 3e-40 ATPHOS34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G21210 102 / 4e-24 zinc ion binding (.1) AT3G03270 45 / 2e-05 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT4G31230 43 / 0.0002 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G17020 41 / 0.0002 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G24370 42 / 0.0003 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 41 / 0.0008 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150200 [exp] 256 / 3e-85 AT1G11360 209 / 1e-67 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.011G039800 [exp] 163 / 5e-49 AT1G11360 269 / 3e-91 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.011G125500 [exp] 156 / 4e-46 AT5G54430 237 / 3e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.001G409100 [exp] 152 / 6e-45 AT5G54430 226 / 2e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.006G092700 [exp] 43 / 6e-05 AT3G53990 207 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.013G009800 [exp] 39 / 0.001 AT3G62550 172 / 2e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039730 [exp] 182 / 8e-56 AT1G11360 288 / 3e-98 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10031594 [exp] 174 / 4e-53 AT1G11360 257 / 2e-86 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10033749 [exp] 170 / 2e-51 AT1G11360 245 / 1e-81 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10037867 [exp] 138 / 1e-37 AT1G11360 244 / 1e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10038561 [exp] 127 / 3e-35 AT1G11360 224 / 7e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10016900 [exp] 50 / 2e-06 AT3G17020 229 / 1e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10018515 [exp] 45 / 5e-06 AT1G11360 127 / 9e-38 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10037761 [exp] 44 / 3e-05 AT3G17020 224 / 4e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10009896 [exp] 42 / 0.0007 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Potri.019G119400.4 pacid=42774142 polypeptide=Potri.019G119400.4.p locus=Potri.019G119400 ID=Potri.019G119400.4.v4.1 annot-version=v4.1 ATGAACTCAAAACAACCATACCAGTCTGAACCGGACCTCCCAGTTCCACCACTCCCCACACTCCGCGTCCGCTCACCTTCTCTCTCCACCGCCCCCACAA CCAACCGCCGTGTTGCCATAGCCGTGGACCTTTCCGACGAGAGTGCATATGCAGTCAAATGGGCGGTCCAGAACTACCTCCGTCCAGGTGATGCCGTGAT CCTCCTCCACGTCCGGCCTACCTCCGCCCTCTACGGCGCTGATTGGGGGTCCATTCAACACCAAATCAATAACAACAACACCCCTTTTGATCAAAATAAC CCAGACAGTTCTGACAATCAAGAAAGGCAGAAACTTGAGGATGATTTTGATAGTTTTACAAATAACAAAGCCAATTTGCTGGCTAAACCATTGTTGGAGG CTGATGTTCCTTTCAAGATTCATATAGTGAAGGATCATGACATGAAGGAGAGGCTTTGTTTGGAAGTTGAGAGGTTGGGGTTAAGTGCTGTGATAATGGG AAGTAGAGGTTTTGGTGCTACAAGAAAGATGGGGGGTGGTAAAGGAGGGATTGTTGGTGGTGGGAGATTAGGGAGTGTTAGTGATTATTGTGTGCAGCAT TGTGTTTGTCCTGTTGTTGTTGTTAGGTGTAATGATGATGGTAAAGAGGGAGAGAGTGTGAAAATAGGAGGTCTTGGTGAGGAGATTGAGGAGGGTCTTC ATCCTGTGCCTGAGGAGGACCAAGAGGAGTGTGTTGATGATGAGCTGAAAGGTTTGTATTTTGGAACTTTTTGCGTCATTTTTAGGTATGAAATGATGAG TTTTTTATTTTGTGATGTGGGTTTTGTGTTTGTGTGGGGAAATTTTGGGTTAGGTGATTGGTTTGGTTAG
AA sequence Show only first row Show all	>Potri.019G119400.4 pacid=42774142 polypeptide=Potri.019G119400.4.p locus=Potri.019G119400 ID=Potri.019G119400.4.v4.1 annot-version=v4.1 MNSKQPYQSEPDLPVPPLPTLRVRSPSLSTAPTTNRRVAIAVDLSDESAYAVKWAVQNYLRPGDAVILLHVRPTSALYGADWGSIQHQINNNNTPFDQNN PDSSDNQERQKLEDDFDSFTNNKANLLAKPLLEADVPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGATRKMGGGKGGIVGGGRLGSVSDYCVQH CVCPVVVVRCNDDGKEGESVKIGGLGEEIEEGLHPVPEEDQEECVDDELKGLYFGTFCVIFRYEMMSFLFCDVGFVFVWGNFGLGDWFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11360			Adenine nucleotide alpha hydro...		Potri.019G119400 [exp]	0	1
					Potri.010G176250 [exp]	1.41	0.8639
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Potri.001G242600 [exp]	2.64	0.8653
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.006G203200 [exp]	7.74	0.8541
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Potri.003G137400 [exp]	10.53	0.8141
					Potri.005G205000 [exp]	12.00	0.8635
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.006G115100 [exp]	14.83	0.8584
AT3G60530	GATA	GATA4	GATA transcription factor 4 (....		Potri.002G142800 [exp]	15.81	0.8431
AT5G36210			alpha/beta-Hydrolases superfam...		Potri.002G128700 [exp]	21.49	0.8532
					Potri.011G146000 [exp]	22.49	0.8429
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.004G140600 [exp]	23.66	0.7960	ABF1.1

Compare expression of checked genes

Potri.019G119400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.