Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03260 520 / 1e-176 Outer arm dynein light chain 1 protein (.1.2) AT1G78230 245 / 2e-71 Outer arm dynein light chain 1 protein (.1) AT5G22320 72 / 6e-13 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G34680 59 / 2e-08 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT3G17920 54 / 5e-07 Outer arm dynein light chain 1 protein (.1.2) AT5G19680 52 / 1e-06 Leucine-rich repeat (LRR) family protein (.1) AT1G48540 47 / 4e-05 Outer arm dynein light chain 1 protein (.1.2) AT1G61180 47 / 4e-05 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G80080 47 / 6e-05 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT1G07390 46 / 9e-05 AtRLP1 receptor like protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150300 [exp] 1036 / 0 AT4G03260 504 / 2e-170 Outer arm dynein light chain 1 protein (.1.2) Potri.019G119300 [exp] 954 / 0 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.002G097800 [exp] 261 / 3e-77 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.005G164000 [exp] 257 / 8e-76 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.011G090200 [exp] 60 / 6e-09 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.004G199200 [exp] 58 / 1e-08 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.001G357700 [exp] 55 / 2e-07 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.018G086200 [exp] 53 / 4e-07 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.006G163900 [exp] 51 / 1e-06 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018514 [exp] 600 / 0 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10039729 [exp] 517 / 5e-176 AT4G03260 429 / 2e-142 Outer arm dynein light chain 1 protein (.1.2) Lus10033444 [exp] 250 / 5e-74 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10020932 [exp] 249 / 3e-73 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10038534 [exp] 56 / 1e-07 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10012715 [exp] 52 / 1e-06 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10010891 [exp] 50 / 2e-06 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10035429 [exp] 50 / 5e-06 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017994 [exp] 50 / 5e-06 AT1G48540 685 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Lus10017178 [exp] 49 / 1e-05 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G119500.2 pacid=42773693 polypeptide=Potri.019G119500.2.p locus=Potri.019G119500 ID=Potri.019G119500.2.v4.1 annot-version=v4.1 ATGGTTAGGTTCTCATGCTTCAGTGCTCGCATCCATTCTCACAAATCAAAGAAAACAGCCCAACCTTCTGATGAAGCAAGGCATAAGAGTTTAGAAGATC TATCTCAAATTCAAGCTCTGCCATTGACTAAATCTTCAAGCTTAATACTTCCAAAGGCACAAGCGGGTAATCAAATTAGTAATGGTGTCAGGGATGCTAC AAGAGCTGATGTATCTGTTGAACAAAGCTGGAATTCTGACAAGACTGAGAACAAAATGGGTGACAAGAATGACATGGGAGCCCATCAGACAAGGCTTATT AGGAAAAGTCAGTCTCTAGGTAGTGGATTATGCCATGAAGGAAGGGTTCTATGTGACAATGATACTGAGGAGATAGATCAAGGAGTCTATAGTGATTCCC TTGATCAGAATGGGTTACTCAGACCAGATGGAAGCAAGGATTCAGGAATAAGCACAACTAGTGAGCATGAGAAAGCTCTGCAACTAGGATCTTTTAATGG GAGTTACGGTTTTGTTAAGAAGGAATGCATATTCTCAATTGACAATCGTCATTATTCTGAAAAGGAAGGACCTGAAAATTCTGATACTCCATTTTCTGGT GATGGTGGCAATTTATCTGGTAACCAGTCTCCTCACAGCCCTCCTATGTTCGAAAAGTCATGCTCTTTTTCAGACATGGGCCCTTATGCACTGACTTCCC ATAGACATTCTTATGAATATTTAGCACCACAATCAAGATCTTCTGAGGACCTACATGCTCTAGGCATGAGGTTGACAACGATTTCAATTCAGGGGGGTGA AACTCAGAAAATGAAAGAGCAAGGAAGGGATGATAACATGCCTAATACTGAGGAAAACAATATTGGAAGTTGTATTGATGAAGGTTTTGAGTCTTATAAT TACTCAGCTTTGGCACAGAACTGGATAATGCCGGTTATGGATGAGGTGAACTTGGCAAAAGATCTTCAAGGGGAATCCTCCACTCAGCAGTGGGAAGAAT TGCCGAGTAAGGATTTTAAAATGAAGCGTATCAAAGATTGGGTAAACAATCTTCAACACTTTGGCCCTTTGGAAGAAACAAATGGATTGCCTGGTACTGA TGACCCGGTAAAGGGAGATTCCAATGATTTGACTTCTGCAAAGGTTGATAATAAGGACACTGCTGGCATAGAAGCTGCTAAAAGATACATCTCTTCTTTG AGTGTCTCTGCTACCACGGCTCATCTGTCAAACCATGAGCTGGCAGTGATCCCATTTCTTGGTGTATTTGGTAGCCTAAGGATGCTTAATCTATCCGGGA ACTCTATAGTGAGAATAACAGCTGGTGCCCTCCCTCGAGGACTTCATATGTTGAATTTGTCAAGAAACAATATTTCCACCATTGAGGGTTTACGTGAGCT TACCCGCCTTCGTGTACTTGATTTGAGCTACAATCGTATATTCAGAATTGGACACGGTCTGGCATCATGTTCCTCCTTGAAAGAGTTATACTTGGCAGCA AATAAAATAAGCGAGGTAGAGGGTCTCCACCGTTTGTTGAAACTGTCTGTGCTGGATCTGCGTTTCAACAAAATCTCGACAACCAAATGTCTAGGCCAAC TTGCAGCCAACTACAGTTCCTTGCAAGCCATCAGCTTGGAAGGAAATTCGGCCCAGAAAAATGTTGGAGATGAACAACTCAAGAAATATCTGCAAGGCCT TCTTCCCCATCTGATTTACTTCAATCGGCAGTCAATTAAAGCCAGCACTTTGAAAGACACTGCCGATCGATCAGTTAGGCTAGGCATCAGTAGCCATCAA TTTGATCGTGGCCTCAGGTCAGATAACAAGGCTGTGAGAAAGGCTAGCCATGGTCTAGGTGGTGCAAGGCCATTACCTTCATCAACTCATGCTCGTAAAA GTCAACCTGTGATCTCAACTAAACGGTCAAGTGGAAGGCATCTCCGTTCACAACCAAGTGGAACCCAAGCAACAACCAGTCTTCGTCATCATGATCTTGG TAGCAAACTCCTGAACTTTAGATCAGAGTCGTCCTCTGTTCACAGGAGTCGAAGTGAGGGGACACTGGGAGCTTTCTAG
AA sequence Show only first row Show all	>Potri.019G119500.2 pacid=42773693 polypeptide=Potri.019G119500.2.p locus=Potri.019G119500 ID=Potri.019G119500.2.v4.1 annot-version=v4.1 MVRFSCFSARIHSHKSKKTAQPSDEARHKSLEDLSQIQALPLTKSSSLILPKAQAGNQISNGVRDATRADVSVEQSWNSDKTENKMGDKNDMGAHQTRLI RKSQSLGSGLCHEGRVLCDNDTEEIDQGVYSDSLDQNGLLRPDGSKDSGISTTSEHEKALQLGSFNGSYGFVKKECIFSIDNRHYSEKEGPENSDTPFSG DGGNLSGNQSPHSPPMFEKSCSFSDMGPYALTSHRHSYEYLAPQSRSSEDLHALGMRLTTISIQGGETQKMKEQGRDDNMPNTEENNIGSCIDEGFESYN YSALAQNWIMPVMDEVNLAKDLQGESSTQQWEELPSKDFKMKRIKDWVNNLQHFGPLEETNGLPGTDDPVKGDSNDLTSAKVDNKDTAGIEAAKRYISSL SVSATTAHLSNHELAVIPFLGVFGSLRMLNLSGNSIVRITAGALPRGLHMLNLSRNNISTIEGLRELTRLRVLDLSYNRIFRIGHGLASCSSLKELYLAA NKISEVEGLHRLLKLSVLDLRFNKISTTKCLGQLAANYSSLQAISLEGNSAQKNVGDEQLKKYLQGLLPHLIYFNRQSIKASTLKDTADRSVRLGISSHQ FDRGLRSDNKAVRKASHGLGGARPLPSSTHARKSQPVISTKRSSGRHLRSQPSGTQATTSLRHHDLGSKLLNFRSESSSVHRSRSEGTLGAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03260			Outer arm dynein light chain 1...		Potri.019G119500 [exp]	0	1
AT5G15270			RNA-binding KH domain-containi...		Potri.017G085500 [exp]	38.26	0.5291
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.011G050400 [exp]	51.72	0.5109
AT1G49980			DNA/RNA polymerases superfamil...		Potri.001G293600 [exp]	53.75	0.4728
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.001G118900 [exp]	95.72	0.4758
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	111.71	0.4894
					Potri.004G065500 [exp]	127.96	0.4696
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Potri.013G026800 [exp]	205.76	0.4493

Compare expression of checked genes

Potri.019G119500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.