Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 984 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 408 / 2e-127 B120 S-locus lectin protein kinase family protein (.1) AT4G23180 402 / 4e-127 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23140 399 / 8e-126 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23230 393 / 9e-126 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT1G11330 401 / 9e-125 S-locus lectin protein kinase family protein (.1.2) AT4G23190 395 / 1e-124 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G27300 398 / 6e-124 S-locus lectin protein kinase family protein (.1) AT4G05200 394 / 7e-124 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23130 392 / 1e-123 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119700 [exp] 1816 / 0 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 1755 / 0 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 1029 / 0 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120000 [exp] 942 / 0 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119851 [exp] 486 / 2e-165 AT4G03230 325 / 1e-104 S-locus lectin protein kinase family protein (.1) Potri.011G027501 [exp] 434 / 9e-140 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G125000 [exp] 433 / 5e-137 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 432 / 1e-136 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 431 / 1e-136 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031591 [exp] 820 / 0 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018512 [exp] 815 / 0 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 495 / 2e-167 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 472 / 7e-154 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 431 / 4e-136 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 432 / 1e-135 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 416 / 3e-130 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 400 / 4e-130 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 414 / 1e-129 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 411 / 2e-128 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.019G119600.3 pacid=42773339 polypeptide=Potri.019G119600.3.p locus=Potri.019G119600 ID=Potri.019G119600.3.v4.1 annot-version=v4.1 ATGGTAAGAAGAGGTCTTAACCAGAGAGATCTATGTGCAATGCATAGCATGCTATCAACCGTTTGCTTTTCTTATGCATTCTTATTATGCTCCTCCCTAT TATGTTGCTTTGCTAGAGATACCATCACATATGCTGGTAATTTGATTAGTCATGATGGTGGAGAAACTCTTGTTTCAGCAGGAAAAAGGTTTGAACTTGG GTTCTTTGCCCCCGAACAAAGTTCTGTTTACGGAAGCTATGTAGGAATTTGGTATTACAGGTCGCATCCACGAATAGTTGTGTGGGTTGCCAATCGAAAC AGCCCACTTCTTGATGGTGGAGCAGTTTTGGCTGTCACAGATGATGGAAACCTCAAGATTTTGGATAAAAATGCAGATCCTTTTTGGTCTACAGCGCTTC AATCAACATCAAAACCAGGGTATCGGTTGGCTAAGCTCTTAGATTCTGGGAACTTGGTTTTTGGTGATAGTAATACCCTTTCGACAACTATTCTATGGCA AAGCTTTGAACATCCAACTGATACATTTCTTTCAGGTATGAAGATGAGTGGGAATCTAAAATTGACTTCATGGAAAAGTCAAGTTGATCCAAAAGAAGGT AACTTCACATTTCAGCTAGATGGAGAAAAGAACCAGTTTGTTATCGTCAATGACTATGTAAAGCATTGGACTAGTGGGGAGTCAAGTGATTTCTTTAGCT CAGAAAGAATGCCTGATGGAATAGTATATTTTCTATCGAACTTCACCAGATCTGTTCCAAATTCAAAAGGCAGAAGAACAACTCGATCACCCTCGGATTA TAATAATACAAGGATTAGGTTGGATGTTAAAGGGGAGCTACAATACTGGAACTTCGATGTGTATACAAATTGGTCTTTGCAATGGTTTGAGCCGAGAGAC AAATGCAATGTGTTTAATGCCTGTGGGAACTTTGGCAGCTGCAATCTGTACAACATGTTGGCTTGCAGGTGTTTGCCAGGATTTGAGCCTATATCACAGG AAAATTGGAGGAATGGAGATTTCTCTGGTGGTTGCATCAGAAGCGCTGCCGGATGTGGGAAGAATGACACCTTCTTGAGCTTGAAGATGATGAGAGTTGG GCAACCAGACACTTCATTTGTGGTTGAGGATGAAAAGCAATGCAGAGAGGAGTGTCTCAATAAGTGCCAATGCCGAGCTCATTCCTTTGTGAAGGGGGAA GTCAATATGCGAAGGGACAGACCGCCTAGCGACAACAGTTGCTTGATCTGGATGGATGATCTTAAAGATCTTCAGGAGGAATATTCTTATGGTGGGCCCG ATCTCTTTGTTCGTGTCACCATTGCTGACATAGAATCAAAGGCTAAAAGTTGTGAGCCTTGTGGCATAAATGTGATTCCTTATCCTCTAAGTACTGGATC AGATTGTGGTGACCCCATGTACTTCAGTTTCTACTGCGATAATTCCACAGGAAAACTCAGCTTTAAGACACACAACGGCACCTATAATGTCACTACCATC AATCAAGATAGAAGAACATTTGCTATCCAAGAGAAAGATGTAGCTGATTGTAATGCCAGTACAAGAGGTCAAATTGGGAAGTTCAACACGTCATCTCCAT TTAAGATGAACGCCTCTAAACGCTGGTGTGACTCCAATGTTTCATCTCAAGGTCTGGTAGAAATAGATATTGGTTGGGAGCCACCTCCAGAGCCAGTCTG CTCTTCATCTTCGGACTGCGACGATTGGCCAAATTCAACTTGCAATGTAACAGGAAATCGTACAGCGAGATGCCTCTGCAATTCAAATTTTTGGTGGGAT GGCATGGCTCTAAATTGCGTTCAAGTTGTCGATGGACAAGCAGGAGGATATTCGAGAAAAAAGAAACCATTGTCTTTGATTGTAGGAGTTACAATTGCTA GTGTCATAGTTCTATCAAGCATCTTCCTTTACACCTGCATTTTTATGAGAAAGAAGGCCAAACGACGAGAAAGCCAGCAAAATACTGAAAGAAATGCAGC TCTTTTGTATGGCACTGAGAAACGGGTCAAGAACTTGATAGATGCAGAAGAGTTCAACGAAGAAGATAAGAAGGGCATAGATGTACCTTTATTTGATTTA GACAGCATACTAGCGGCTACGGATTATTTTTCAGAAGCAAACAAGCTTGGAAGAGGGGGCTTCGGACCTGTTTACAAAGGAAAATTTCCAGGAGGTCAAG AAATTGCAATAAAACGACTCTCTAGTGTTTCAGGACAAGGCCTAGAGGAGTTTAAGAATGAGGTGATTTTGATTGCTAGATTGCAGCATCGGAATCTTGT CAGATTAGTAGGTTACTGCATAAAAGGAGATGAAAAGATTTTACTCTATGAATATATGCCCAACAAAAGCTTAGATTCCTTCATATTTGATCGAGATCTC GGAATGTTACTGGATTGGGAGATGCGCTTAGATATCATTTTAGGAGTTGCTAGAGGTCTTCTTTATCTCCACCAAGATTCTAGACTCAGGATTATTCATC GTGATATGAAAACGAGCAACATTTTATTAGATGCGGAAATGAATCCAAAAATTTCTGACTTTGGATTGGCAAGGATGTTCGAAGGCAAACAAACCGAAGG GAGCACCAACAGAGTTGCTGGAACTTATGGCTACATGTCGCCGGAGTACGCATTAGATGGCTTATTCTCTGTCAAATCTGATGTTTTTAGTTTCGGCGTG GTTGTGCTTGAGATTCTTAGTGGGAAAAGGAACACAGGATATTTTAATTCTGATGAAGCCCAAAGCCTTCTAGCTTATGCTTGGAGATTATGGAGAGAAG ACAAGTCATTGGATTTAATGGACGAGACATCACGTGAAAGTTGCAACACCAATGAGTTTCTGAGGTGTGTAAATGCTGCACTCTTGTGCGTACAAGATGA TCCATCCGACCGTCCGACCATGTCAAATGTTGTTGTGATGCTTAGCAGTGAAACTGCAAACTTGCCGGTTCCTAAGAACCCGGCCTTTTTTATACGAAGA GGCCTTTCTGGCACAGCTTTTGCTTCAAGCGAACAAGAGGGAGGCCTTTCTGGCACAGCTTCATCTTCAAGTAAACAAGAAAGAAGCATCGATACAACGA TTGCTTCAGACGAAGTTAGATAA
AA sequence Show only first row Show all	>Potri.019G119600.3 pacid=42773339 polypeptide=Potri.019G119600.3.p locus=Potri.019G119600 ID=Potri.019G119600.3.v4.1 annot-version=v4.1 MVRRGLNQRDLCAMHSMLSTVCFSYAFLLCSSLLCCFARDTITYAGNLISHDGGETLVSAGKRFELGFFAPEQSSVYGSYVGIWYYRSHPRIVVWVANRN SPLLDGGAVLAVTDDGNLKILDKNADPFWSTALQSTSKPGYRLAKLLDSGNLVFGDSNTLSTTILWQSFEHPTDTFLSGMKMSGNLKLTSWKSQVDPKEG NFTFQLDGEKNQFVIVNDYVKHWTSGESSDFFSSERMPDGIVYFLSNFTRSVPNSKGRRTTRSPSDYNNTRIRLDVKGELQYWNFDVYTNWSLQWFEPRD KCNVFNACGNFGSCNLYNMLACRCLPGFEPISQENWRNGDFSGGCIRSAAGCGKNDTFLSLKMMRVGQPDTSFVVEDEKQCREECLNKCQCRAHSFVKGE VNMRRDRPPSDNSCLIWMDDLKDLQEEYSYGGPDLFVRVTIADIESKAKSCEPCGINVIPYPLSTGSDCGDPMYFSFYCDNSTGKLSFKTHNGTYNVTTI NQDRRTFAIQEKDVADCNASTRGQIGKFNTSSPFKMNASKRWCDSNVSSQGLVEIDIGWEPPPEPVCSSSSDCDDWPNSTCNVTGNRTARCLCNSNFWWD GMALNCVQVVDGQAGGYSRKKKPLSLIVGVTIASVIVLSSIFLYTCIFMRKKAKRRESQQNTERNAALLYGTEKRVKNLIDAEEFNEEDKKGIDVPLFDL DSILAATDYFSEANKLGRGGFGPVYKGKFPGGQEIAIKRLSSVSGQGLEEFKNEVILIARLQHRNLVRLVGYCIKGDEKILLYEYMPNKSLDSFIFDRDL GMLLDWEMRLDIILGVARGLLYLHQDSRLRIIHRDMKTSNILLDAEMNPKISDFGLARMFEGKQTEGSTNRVAGTYGYMSPEYALDGLFSVKSDVFSFGV VVLEILSGKRNTGYFNSDEAQSLLAYAWRLWREDKSLDLMDETSRESCNTNEFLRCVNAALLCVQDDPSDRPTMSNVVVMLSSETANLPVPKNPAFFIRR GLSGTAFASSEQEGGLSGTASSSSKQERSIDTTIASDEVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119600 [exp]	0	1
AT2G01340		At17.1	unknown protein		Potri.010G113800 [exp]	1.73	0.9320
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056400 [exp]	7.74	0.9283
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.012G089600 [exp]	11.83	0.9187
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G040200 [exp]	15.32	0.9263
AT2G21045			Rhodanese/Cell cycle control p...		Potri.014G131300 [exp]	16.00	0.9271
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.006G089800 [exp]	21.77	0.9247
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.003G144200 [exp]	22.36	0.8892
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G054002 [exp]	24.18	0.9148
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.012G069200 [exp]	28.00	0.9219
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	29.46	0.9245

Compare expression of checked genes

Potri.019G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.