Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 1025 / 0 S-locus lectin protein kinase family protein (.1) AT4G23180 405 / 2e-128 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21390 410 / 3e-128 B120 S-locus lectin protein kinase family protein (.1) AT4G23140 404 / 9e-128 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT1G11330 408 / 1e-127 S-locus lectin protein kinase family protein (.1.2) AT4G23230 395 / 1e-126 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23150 397 / 1e-125 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G05200 396 / 8e-125 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23130 395 / 1e-124 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23190 395 / 1e-124 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119600 [exp] 1870 / 0 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 1764 / 0 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 1082 / 0 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120000 [exp] 1023 / 0 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119851 [exp] 513 / 9e-176 AT4G03230 325 / 1e-104 S-locus lectin protein kinase family protein (.1) Potri.019G119750 [exp] 422 / 1e-140 AT4G03230 162 / 3e-45 S-locus lectin protein kinase family protein (.1) Potri.011G027501 [exp] 430 / 2e-138 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G125151 [exp] 434 / 1e-137 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 434 / 2e-137 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031591 [exp] 882 / 0 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018512 [exp] 866 / 0 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 504 / 6e-171 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 482 / 8e-158 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 442 / 2e-139 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 437 / 2e-138 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 438 / 1e-131 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10037729 [exp] 418 / 3e-131 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 402 / 8e-131 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 416 / 2e-130 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.019G119700.3 pacid=42774083 polypeptide=Potri.019G119700.3.p locus=Potri.019G119700 ID=Potri.019G119700.3.v4.1 annot-version=v4.1 ATGGTAAGAAGAGGTCTTAACCAGAGAGATCCACGTGCAATGCATAGCAGGCTATCAACCGTTTTCTTTTCTTATGCATTCTTATTATGCTCCTCCCTTT TATGTTGCTTTGCTAGAGATACCATCACACGTGCTAGTAGTTTGATTACTAATGATGGTGGAGAAACTATTGTTTCAGCAGGAACAAGGTTTGAACTGGG GTTCTTTGCTCCCGAACAAAGTTCTGCTTACGGAAGGTATGTAGGAATTTGGTATTACAGGTCGAATCCACGAATAGTTGTTTGGGTTGCCAATCGAGAC AACCCACTTCTTGATGGTGGAGCAGTTTTGGCTGTCACAGAAGATGGAAATCTCAAGATTTTGGAAAAAAATGGAGATCCTTTTTGGTCTACAGGGCTTG AATCAACATCAAAACCAGCGAATGGGTTGGCAAAGCTCTTAGATTCTGGGAACTTGGTTTTGTGTGATAGTAATAACCTTTCGACAACTATTCTATGGCA AAGCTTTGAACATCCAACTGATACATTTCTTTCAGGAATGAAGATAAGTGGGAATCTAACATTGACTTCATGGAAAAGTCAAGTTGATCCCAAAAAAGGT GACTTCACATTTCAGTTAGATGAAGAAACGAACCAGTTTGTTATCGTCAATGACCATATAACGTATTGGACTAGTACTGGGGAGTCAAGTGATTTCTTTA GCTCAGAAAGAATGCCTGATGGAACAGTATATTTTCTATCGAACTTCACCAGATCTGTTCCAAATTCAAGAGGCAGCAGAACAACTCGATCACCCTCGGA TTATAATAATACAAGGATTAGGTTGGATGTTAAAGGGGAGCTACAATACTGGACCTCCGATGTGTATACAAATTGGTATTTGCAATGGTTTGAGCCGAGA GACAAATGCAGTGTGCTTAATGCCTGTGGGAGTTTTGGAAGCTGCAATCTATACAATAGGTTGGCTTGCAGATGTTTGCCCGGATTTGAGCCTAACTCAC AGGAAAATTGGAGGAATGAAGATTTCTCTGGTGGTTGCATCAGAAGCGCTCCCGTATGTAAGAATGACACCTTCTTGAGCTTGAAGAATATGAGAGTTGG GCAACCAGACATTAAATATGAGGCTGAGGATGAAAAGCAATGCAGAGAGGGGTGTCTCGATAAGTGCCAATGCCAAGCTTATTCCTTTGTGAAGTGGGAA ATCAATATGCGAAGGGACAGACAACCAGGCCACAACACTTGCTTGATGTGGATGGATGATCTTAAAGATCTCCAGGAGGAATATTCTTATGATGGGCCGG ATCTCTTTGTTCGTGTCCCCATTGCTGAAATAGAATCAAAAGCTAAAAGTTGTGAGCCTTGTGGCATAAATGTGATTCCTTATCCACTAAGTACTGGATC AGATTGTGGTGACCCCATGTACTCCAGTTTCTACTGCGATAATTCCACAGGAAAACTCAGCTTTAAGACACACAACGGCACCTATAATGTCACTACCATC AATCAAGATACAAGAACATTTGTTATCCAAGAGAAAGATGTAGATGATTGTAATGCCAGTACAAGAGGTCAAATTCGGAAGTTCAACACGTCATCTCCAT TTAAGATGAACGCCTCTAAACGCTGGTGTGATTCCAATGTTTCATCTCAAGGTCTGGTAGAAATAGATATTGGTTGGGCGCCACCTCCAGAGCCAGTCTG CTCTTCATCTTCAGACTGCGACGATTGGCCAAATTCAACTTGCAATGTAACAGGAAATGGTACAGCGAGATGCCTCTGCAATTCAAATTTTTGGTGGGAT GGCATGGCTCTAAATTGCGTTCATGGAGGATATTCGAGAAAAAAGAAACCATTGCCTTTGATTGTAGGAGTTACAATTGCTAGTGTCATAGTTCTATCAA GCATCTTCCTTTACATCTGCATTTTGATGAGAAAGAAGGCCAAACGACGAGAAAGCCAGCAAAATACTGAAAGAAATGCAGCTCTTTTGTATGGCACTGA GAAACGGGTCAAGAACTTGATAGATGCAGAAGAGTTCAAGGAAGAAGATAAGAAGGGCATAGATGTACCTTTCTTTGATTTAGACAGCATACTAGCTGCT ACGGATTATTTTTCAGAAGCAAACAAGCTTGGAAGAGGGGGATTCGGACCTGTTTACAAAGGAAAATTTCCAGGAGGTCAAGAAATCGCAATAAAACGAC TCTCTAGTGTTTCAGGACAAGGCCTAGAGGAGTTTAAGAATGAGGTGATCTTGATTGCTAGATTGCAGCATCGGAATCTTGTCAGACTAGTAGGTTACTG CGTAAAAGGAGAAGAAAAGATTTTACTCTATGAATATATGCCTAACAAAAGCTTAGATTCCTTCATATTTGATCGAGATCTCGGAATGTTACTGAATTGG GAGATGCGCTTTGATATCATTTTAGGAGTTGCTAGAGGTCTTCTTTATCTCCACCAAGATTCTAGACTCAGGATTATTCATCGTGATATGAAAACGAGCA ACATTTTATTAGATGCGGAAATGAATCCCAAAATTTCTGACTTTGGATTGGCAAGGATGTTTGAAGGCAAACAAACCGAAGGGAGCACGAACAGAGTTGT TGGAACTTATGGCTACATGTCGCCAGAGTACGCATTAGATGGCTTATTCTCTGTCAAATCTGATGTTTTTAGTTTCGGCGTAGTTGTACTTGAGATTCTT AGTGGGAAAAGGAACACGGGATATTTTAATTCTGATGAAGCCCAAAGCCTTCTAGCTTATGCTTGGAGATTATGGAGAGAAGACAAGGCATTGGATTTAA TGGACGAGACATTACGTGAAAGTTGCAACACCAATGAGTTTCTGAGGTGTGTAAATGCTGCACTCTTGTGCGTACAAGATGATCCATCCGACCGTCCGAC CATGTCAAATGTTGTTGTGATGCTTAGCAGTGAAACTGCAAACTTGCCGGTTCCTAAGAACCCAGCCTTTTTTATACGAAGAGGCCTTTCTGGCACAGCT TCTTGTTCAAGTAAACAAGGAACAGGCCTTTTTGGCACAGCTTCATCTTCAAGTAAACAAGAAACAAGCATCGACACAACGATTGCTTCAGACGAAGGTA GATAA
AA sequence Show only first row Show all	>Potri.019G119700.3 pacid=42774083 polypeptide=Potri.019G119700.3.p locus=Potri.019G119700 ID=Potri.019G119700.3.v4.1 annot-version=v4.1 MVRRGLNQRDPRAMHSRLSTVFFSYAFLLCSSLLCCFARDTITRASSLITNDGGETIVSAGTRFELGFFAPEQSSAYGRYVGIWYYRSNPRIVVWVANRD NPLLDGGAVLAVTEDGNLKILEKNGDPFWSTGLESTSKPANGLAKLLDSGNLVLCDSNNLSTTILWQSFEHPTDTFLSGMKISGNLTLTSWKSQVDPKKG DFTFQLDEETNQFVIVNDHITYWTSTGESSDFFSSERMPDGTVYFLSNFTRSVPNSRGSRTTRSPSDYNNTRIRLDVKGELQYWTSDVYTNWYLQWFEPR DKCSVLNACGSFGSCNLYNRLACRCLPGFEPNSQENWRNEDFSGGCIRSAPVCKNDTFLSLKNMRVGQPDIKYEAEDEKQCREGCLDKCQCQAYSFVKWE INMRRDRQPGHNTCLMWMDDLKDLQEEYSYDGPDLFVRVPIAEIESKAKSCEPCGINVIPYPLSTGSDCGDPMYSSFYCDNSTGKLSFKTHNGTYNVTTI NQDTRTFVIQEKDVDDCNASTRGQIRKFNTSSPFKMNASKRWCDSNVSSQGLVEIDIGWAPPPEPVCSSSSDCDDWPNSTCNVTGNGTARCLCNSNFWWD GMALNCVHGGYSRKKKPLPLIVGVTIASVIVLSSIFLYICILMRKKAKRRESQQNTERNAALLYGTEKRVKNLIDAEEFKEEDKKGIDVPFFDLDSILAA TDYFSEANKLGRGGFGPVYKGKFPGGQEIAIKRLSSVSGQGLEEFKNEVILIARLQHRNLVRLVGYCVKGEEKILLYEYMPNKSLDSFIFDRDLGMLLNW EMRFDIILGVARGLLYLHQDSRLRIIHRDMKTSNILLDAEMNPKISDFGLARMFEGKQTEGSTNRVVGTYGYMSPEYALDGLFSVKSDVFSFGVVVLEIL SGKRNTGYFNSDEAQSLLAYAWRLWREDKALDLMDETLRESCNTNEFLRCVNAALLCVQDDPSDRPTMSNVVVMLSSETANLPVPKNPAFFIRRGLSGTA SCSSKQGTGLFGTASSSSKQETSIDTTIASDEGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119700 [exp]	0	1
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119750 [exp]	1.41	0.9737
AT5G42760			Leucine carboxyl methyltransfe...		Potri.002G260300 [exp]	1.73	0.9760
AT1G60470		ATGOLS4	galactinol synthase 4 (.1)		Potri.010G042000 [exp]	4.47	0.9625
AT5G62680			Major facilitator superfamily ...		Potri.012G071500 [exp]	5.47	0.9509
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	6.70	0.9615
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G017002 [exp]	7.00	0.9586
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Potri.002G054400 [exp]	7.48	0.9515
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Potri.013G095500 [exp]	8.36	0.9563
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.008G142900 [exp]	9.16	0.9594
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016400 [exp]	9.48	0.9468

Compare expression of checked genes

Potri.019G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.