Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 328 / 8e-106 S-locus lectin protein kinase family protein (.1) AT4G23140 288 / 2e-93 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23180 287 / 4e-93 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23150 284 / 8e-92 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23230 280 / 8e-92 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G21390 286 / 7e-91 B120 S-locus lectin protein kinase family protein (.1) AT4G05200 281 / 2e-90 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23190 276 / 1e-88 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT1G65790 279 / 2e-88 ARK1 receptor kinase 1 (.1) AT1G11350 279 / 2e-88 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119700 [exp] 492 / 1e-168 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 488 / 8e-167 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119600 [exp] 469 / 1e-159 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120000 [exp] 346 / 3e-112 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 340 / 5e-110 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G027501 [exp] 305 / 2e-100 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G125601 [exp] 309 / 4e-100 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 307 / 2e-99 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 307 / 2e-99 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033752 [exp] 326 / 6e-112 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10031591 [exp] 322 / 1e-103 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 312 / 9e-103 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 303 / 3e-97 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 299 / 4e-96 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 293 / 1e-95 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041679 [exp] 285 / 5e-94 AT1G11340 417 / 1e-137 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 294 / 6e-94 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018512 [exp] 297 / 7e-94 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007602 [exp] 292 / 7e-94 AT1G65800 788 / 0.0 receptor kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.019G119851.1 pacid=42774470 polypeptide=Potri.019G119851.1.p locus=Potri.019G119851 ID=Potri.019G119851.1.v4.1 annot-version=v4.1 ATGCCTAACAAAAGCTTAGATTCCTTCATATTTGATCGAGATCTCGGAAAGTTACTGAATTGGGAGATGCGCTTTGATATCATTTTAGGAGTTGCTAGAG GTCTTCTTTATCTCCACCAAGATTCTAGACTCAGGATTATTCATCGTGATTTGAAAACGAGCAACATTTTATTAGATGCGGAAATGAATCCCAAAATTTC TGACTTTGGATTGGCAAGGATGTTCGAAGGCAAACAAACCGAAGGGAGCACAAACAGAGTTGTTGGAACTTATGGCTACATGTCGCCAGAGTACGCATTA GATGGCTTATTCTCTGTCAAATCTGATGTTTTTAGTTTCGGCGTAGTTGTACTTGAGATTCTTAGTGGGAAAAGGAACACGGGATATTTTAATTCTGATG AAGCCCAAAGCCTTCTAGCTTATGCTTGGAGATTATGGAGAGAAGACAAGGCATTGGATTTAATGGACGAGACATTACGTGAAAGTTGCAACACCAATGA GTTTCTGAGGTGTGTAAATGCTGCACTCTTGTGCGTACAAGATGATCCATCCGACCGTCCGACCATGTCAAATGTTGTTGTGATGCTTAGCAGTGAAACT GCAAACTTGCCGGTTCCTAAGAACCCAGCCTTTTTTATACGAAAAGGCCTTTCTGGCACAGCTTCTTGTTCAAGTAAACAAGGAACAGGCCTTTCTGGCA CAGCTTCATCTTCAAGTAAACAAGAAACAAGCATCGATACAGCGATTGCTTCAGACGAAGGCAGATAA
AA sequence Show only first row Show all	>Potri.019G119851.1 pacid=42774470 polypeptide=Potri.019G119851.1.p locus=Potri.019G119851 ID=Potri.019G119851.1.v4.1 annot-version=v4.1 MPNKSLDSFIFDRDLGKLLNWEMRFDIILGVARGLLYLHQDSRLRIIHRDLKTSNILLDAEMNPKISDFGLARMFEGKQTEGSTNRVVGTYGYMSPEYAL DGLFSVKSDVFSFGVVVLEILSGKRNTGYFNSDEAQSLLAYAWRLWREDKALDLMDETLRESCNTNEFLRCVNAALLCVQDDPSDRPTMSNVVVMLSSET ANLPVPKNPAFFIRKGLSGTASCSSKQGTGLSGTASSSSKQETSIDTAIASDEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119851 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037533 [exp]	2.44	0.7984
AT5G52450			MATE efflux family protein (.1...		Potri.006G170900 [exp]	13.74	0.6980
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G069800 [exp]	32.31	0.7415
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.012G040050 [exp]	42.95	0.7553
AT5G22090			Protein of unknown function (D...		Potri.009G016600 [exp]	43.47	0.7681
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031600 [exp]	58.48	0.7018	NAC125
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G118800 [exp]	69.28	0.7220
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G352100 [exp]	74.18	0.7156
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G163850 [exp]	98.13	0.7079
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	120.37	0.6841

Compare expression of checked genes

Potri.019G119851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.