Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 974 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 409 / 1e-127 B120 S-locus lectin protein kinase family protein (.1) AT4G23180 403 / 1e-127 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23140 401 / 6e-127 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT1G11330 405 / 3e-126 S-locus lectin protein kinase family protein (.1.2) AT4G23230 393 / 8e-126 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23150 395 / 1e-124 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G05200 394 / 6e-124 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23190 393 / 8e-124 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G23130 392 / 1e-123 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119600 [exp] 1753 / 0 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119700 [exp] 1708 / 0 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 1035 / 0 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120000 [exp] 956 / 0 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119851 [exp] 509 / 2e-174 AT4G03230 325 / 1e-104 S-locus lectin protein kinase family protein (.1) Potri.011G027501 [exp] 429 / 5e-138 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G125601 [exp] 432 / 1e-136 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 431 / 1e-136 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 431 / 4e-136 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031591 [exp] 827 / 0 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018512 [exp] 824 / 0 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 501 / 1e-169 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 483 / 3e-158 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 434 / 3e-137 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 434 / 4e-136 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 414 / 1e-129 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 413 / 3e-129 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 412 / 5e-129 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 397 / 7e-129 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.019G119900.7 pacid=42773977 polypeptide=Potri.019G119900.7.p locus=Potri.019G119900 ID=Potri.019G119900.7.v4.1 annot-version=v4.1 ATGGTAAGAAGAGGTCTTAACCAGAGAGATCTATGTGCAATGCATAGCATGCTATCAACCGTTTTCTTTTCTTATGCTTTCTTATTATGCTCCTCCCTTT TATGTTGCTTTGCTAGAGATACCATCACATATCCTAGAGGTTCGATTAGTAATCGTGGTGAAGAAACTCTTGTTTCAGCAGGAAAAAGGTTTGAACTGGG GTTCTATACTCCTGAACAAGGTTCTGTTTACGAAAGCTATGTAGCAATTTGGTATCACAGGTCGAATCCACCAATAGTTGTGTGGGTTGCCAATCGGAAC AAGCCACTTCTTGATGATGGAGGCGTTTTGGCTGTCACAGGTGATGGAAATCTCAAGATTTTTGATAAAAATGGACATCCTGTTTGGTCTACAAGACTTG AATCAACATCAAAACCAGCGTATCGGTTGGCTAAGCTCTTAGATTCTGGGAACTTGGTTTTTGGTGACAGTAATACCCTTTTGACAACTAGTCTATGGCA AAGCTTTGAACATCCAACTGATACATTTCTTTCAGGTATGAAGATGAGTGCGCATCTAAAATTGATTTCATGGAGAAGTCATCTTGATCCAAAAGAAGGT AACTTCACATTTCAGCTAGATGAAGAAAGGAACCAGTTTGTTATCTCCGATGGCAGTATAAAGCACTGGACTAGTGGGGAGTCAAGTGATTTTCTTAGCT CAGAAAGAATGCCTGATGGAATAGTATATTTTCTATCGAACTTCACCAGAAGTTTTAAATCCATTTCTGCTTCTAGTCTAACTTCAAAATTCAAAGGACC AAATCTATCAACCTCAGATTATAATAATACAAGGATTAGGTTGGACTTCGAAGGGGAGCTACAATACTGGAGCTATAATACAAATTGGTCTAAGCTATGG TGGGAGCCGCGAGACAAATGCAGTGTGTTTAATGCCTGTGGAAACTTTGGCAGCTGCAATCTATACAATAGTTTGGCTTGCAGATGTTTGCCAGGATATG AGCCTAACTCACAGGAAAATTGGACGAAAGGAGATTTCTCGGGTGGTTGCATCAGAAGCTCTGCCGTATGTGGGAAACATGACACCTTCTTGAGCTTGAA GATGATGAGAGTTGGGCAACAAGACACTAAATTTGTGGTTAAGGATGAAAAGCAATGCAGAGAGGAGTGTTTCCGTACGTGCCGATGCCAAGCTCATTCC TTTGTGAAGGGGAGAGTCAACAGGGACAGACAACCTAGCAGCAACAGTTGCTTGATCTGGATGGATCATCTTAAAGATCTTCAGGAGGACTATTCTGATG GTGGGCTAGATCTGTTTGTTCGTGTCACCATTGCTGACATAGAACCGAAGTCTAAAAGCTGTGAGCCTTGTGGCATAAATGTGATTCCTTATCCTCTAAG CACCGGATCACATTGTGGTGACCCCATGTACTTCAGTTTTAACTGCGATAATTCCACAGGAAAACTCAGCTTTAAGACACACAACGGCACCTATAATGTC ACTACCATCAATCCAGATAGAAGAACATTTGTTATCCAAGAGAAAGATGTAGATGATTGCAATGCCAGTACAAGAGGTCAAATTCGGAAGTTCAACACGT CATTTCCATTTAAGATGAACGCCTCTAAACGCTGGTGTGACTCCAATAATTCATCTCAAGGTCTGGTAGAAATAGATATTGGTTGGGAGCCACCTCCAGA GCCAGTCTGCTCTTCATCTTCAGACTGCGACGATTGGCCAAATTCAACTTGCAATGTAACAGGAAATGGTACAGCGAGATGCCTCTGCAATTCAAATTTT TGGTGGGATGGCATGGCTCTAAATTGCGTTCATGCAGGAGGATCTTCGAGAAAAAAGAAACCATTGTCTTTGATTGTAGGAGTTACAATTGCTTGTGTCA TAGTTCTATCAAGCATCTTCCTTTACATCTGCATTTTTATGAGAAAGAAGTCCAAACGACGAGAAAGCCAGCAAAATACTGAAAGAAATGCAGCTCTTTT GTATGGCACTGAGAAACGGGTCAAGAACTTGATAGATGCAGAAGAGTTCAACGAAGAAGATAAGAAGGGCATAGATGTACCTTTCTTTGATTTAGACAGC ATACTAGCGGCTACGGATTATTTTTCAGAAGCAAACAAGCTTGGAAGAGGGGGCTTCGGACCTGTTTACAAAGGAAAATTTCCAGGAGGTCAAGAAATTG CAATAAAACGACTCTCTAGTGTTTCAGGACAAGGCCTAGAGGAGTTTAAGAATGAGGTGATTTTGATTGCTAGATTGCAGCATCGGAATCTTGTCAGACT AGTAGGCTATTGCATAAAAGGAGAAGAAAAGATTTTACTCTATGAATATATGCCTAACAAAAGCTTAGATTCCTTCATATTTGATCGAGATCTCGGAATG TTACTGAATTGGGAGATGCGCTTTGATATCATTTTAGGAGTTGCTAGAGGTCTTCTTTATCTCCACCAAGATTCTAGACTCAGGATTATTCATCGTGATA TGAAAACGAGCAACATTTTATTAGATGCGGAAATGAATCCAAAAATTTCTGACTTTGGATTGGCAAGGATGTTCGAAGGCAAACAAACCGAAGGGAGCAC AAACAGAGTTGTTGGAACTTATGGCTACATGTCGCCAGAGTACGCATTAGATGGCCTATTCTCTGTCAAATCTGATGTTTTTAGTTTCGGCGTCGTTGTA CTTGAGATTCTTAGTGGGAAAAGGAACACAGGATATTTTAATTCTGATGAAGCCCAAAGCCTTCTAGCTTATGCTTGGAGATTATGGAGAGAGGACAAGG TATTGGATTTAATGGACGAGACATTACGTGAGATTTGCAACACCAATGAGTTTCTGAGGTGTGTAAATGCTGCCCTCTTATGCGTACAAGATGATCCATC CGACCGTCCGACCATGTCAAATGTTGTTGTGATGCTTAGCAGTGAAACTGCAAACTTGCCGGTTCCTAAGAACCCAGCCTTTTTTATACGAAGAGGCCTT TCTGGCACAGCTTCTTGTTCAAGTAAACAAGGAACAGGCCTTTTTGGCACAGCTTCATCTTCAAGTAAACAAGAAACAAGCATCGACACAACGATTGCTT CAGACGAAGGTAGATAA
AA sequence Show only first row Show all	>Potri.019G119900.7 pacid=42773977 polypeptide=Potri.019G119900.7.p locus=Potri.019G119900 ID=Potri.019G119900.7.v4.1 annot-version=v4.1 MVRRGLNQRDLCAMHSMLSTVFFSYAFLLCSSLLCCFARDTITYPRGSISNRGEETLVSAGKRFELGFYTPEQGSVYESYVAIWYHRSNPPIVVWVANRN KPLLDDGGVLAVTGDGNLKIFDKNGHPVWSTRLESTSKPAYRLAKLLDSGNLVFGDSNTLLTTSLWQSFEHPTDTFLSGMKMSAHLKLISWRSHLDPKEG NFTFQLDEERNQFVISDGSIKHWTSGESSDFLSSERMPDGIVYFLSNFTRSFKSISASSLTSKFKGPNLSTSDYNNTRIRLDFEGELQYWSYNTNWSKLW WEPRDKCSVFNACGNFGSCNLYNSLACRCLPGYEPNSQENWTKGDFSGGCIRSSAVCGKHDTFLSLKMMRVGQQDTKFVVKDEKQCREECFRTCRCQAHS FVKGRVNRDRQPSSNSCLIWMDHLKDLQEDYSDGGLDLFVRVTIADIEPKSKSCEPCGINVIPYPLSTGSHCGDPMYFSFNCDNSTGKLSFKTHNGTYNV TTINPDRRTFVIQEKDVDDCNASTRGQIRKFNTSFPFKMNASKRWCDSNNSSQGLVEIDIGWEPPPEPVCSSSSDCDDWPNSTCNVTGNGTARCLCNSNF WWDGMALNCVHAGGSSRKKKPLSLIVGVTIACVIVLSSIFLYICIFMRKKSKRRESQQNTERNAALLYGTEKRVKNLIDAEEFNEEDKKGIDVPFFDLDS ILAATDYFSEANKLGRGGFGPVYKGKFPGGQEIAIKRLSSVSGQGLEEFKNEVILIARLQHRNLVRLVGYCIKGEEKILLYEYMPNKSLDSFIFDRDLGM LLNWEMRFDIILGVARGLLYLHQDSRLRIIHRDMKTSNILLDAEMNPKISDFGLARMFEGKQTEGSTNRVVGTYGYMSPEYALDGLFSVKSDVFSFGVVV LEILSGKRNTGYFNSDEAQSLLAYAWRLWREDKVLDLMDETLREICNTNEFLRCVNAALLCVQDDPSDRPTMSNVVVMLSSETANLPVPKNPAFFIRRGL SGTASCSSKQGTGLFGTASSSSKQETSIDTTIASDEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119900 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123400 [exp]	1.41	0.9308
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294100 [exp]	5.29	0.9166
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.001G101500 [exp]	6.32	0.9023
AT5G11290			Plant protein of unknown funct...		Potri.003G208400 [exp]	6.48	0.9118
					Potri.012G120768 [exp]	6.63	0.9111
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.008G078900 [exp]	6.78	0.8790
					Potri.012G120860 [exp]	9.53	0.9083
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120000 [exp]	10.95	0.8980
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.006G267201 [exp]	10.95	0.9042
AT3G61930			unknown protein		Potri.002G179000 [exp]	10.95	0.8955

Compare expression of checked genes

Potri.019G119900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.