Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 967 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 412 / 7e-129 S-locus lectin protein kinase family protein (.1.2) AT4G21390 408 / 2e-127 B120 S-locus lectin protein kinase family protein (.1) AT4G23180 398 / 1e-125 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G61380 396 / 2e-123 SD1-29 S-domain-1 29 (.1) AT1G61610 394 / 6e-122 S-locus lectin protein kinase family protein (.1) AT1G11350 392 / 1e-121 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11340 393 / 3e-121 S-locus lectin protein kinase family protein (.1) AT4G27300 390 / 3e-121 S-locus lectin protein kinase family protein (.1) AT1G11410 389 / 3e-120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150800 [exp] 1048 / 0 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119700 [exp] 1029 / 0 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 1003 / 0 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119600 [exp] 989 / 0 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 430 / 1e-135 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 428 / 4e-135 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 428 / 7e-135 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 425 / 5e-134 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 423 / 4e-133 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018512 [exp] 903 / 0 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031591 [exp] 899 / 0 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 508 / 4e-172 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 499 / 4e-164 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 421 / 3e-132 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 421 / 2e-131 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018407 [exp] 417 / 1e-130 AT1G61390 732 / 0.0 S-locus lectin protein kinase family protein (.1.2) Lus10016860 [exp] 411 / 1e-128 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10020083 [exp] 395 / 5e-128 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 408 / 2e-127 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.019G120000.1 pacid=42774183 polypeptide=Potri.019G120000.1.p locus=Potri.019G120000 ID=Potri.019G120000.1.v4.1 annot-version=v4.1 ATGATGGATGTGAAAGAAAGAACGAGAATTCAAACAGCCCATATCACGATTTCTGCAACCAACATGGTGTCTAGCATCTTCTCATCATTCACACTCTTTC TTTTTCTTAGTTCTTGGATGTGCTCGGCCAGGGATAACATGACATCATCCACTCCACTCAGGGATGAAATGGGACATACTCTTGTTTCTTCTGGAGAAAG ATTTGAACTTGGATTCTTTACTCCATATGGGAGAAATGATGGCAAGAAATACCTAGGCATCCGGTACAGATACAGCCCTCAAACTGTTGTGTGGGTTGCT AACCGTGAAAATCCACTTGATAATTCCAGGGGAGTTTTTTCCCTCGAACAAGATGGAAACCTCCAGGTGATGGATGGAAATAGAACATCTTACTGGTCCG CAAGGATAGAATCAACATCATCTTCATTTTCTTTCACTCGGAGGTTGAAGCTCATGGATTCCGGGAACTTAGTCTTGATCCAAGAAGCTGCAAATGGTTC AGCGATATTGTGGCAAAGCTTTGATTATCCAACTGACACATTTCTTCCTGGAATGAAGATGGACAAGAACTTTATGTTGACTTCTTGGAAGAGTTCCATT GACCCAGCATCAGGAGACTTCAAATTTCAGCTGGATGAAAGAGAAAACCAGTACATCATCATGAAGAACGGATCGATTCCGTACTGGAAAAGTGGAGTTT CAGGAAGTTCTGTAAGATCCGACGAAAGGCTCTGGCTTGTTTCTAACCTGCTCATGAATTCCAGCAGGAAACCAAGCAGACCTCTTGGGAACACAACAAC GACAAATGGAAGTCCTTATAATAAAATAAATTCAACAGCTGTGAATTATAACAATGCAAGACTGGTGATGAATTTCGATGGGCAGATAAAGTTTTTCCTC TGGAGAAATGTGACTTGGACTTTGAACTGGTGGGAACCAAGTGATCGATGCAGTTTATTTGATGCTTGTGGGACTTTTAGTAGTTGCAATAGTCTAAATA GGATTCCTTGCAAGTGTTTGCCAGGATTTCAGCCCAAGTCTCCCGATAATTGGAAATTAGGAAACTTTTCAGAGGGGTGTGAAAGAATGTCACCTTTGTG CAGCAAGGATGTGGTTCAGAACTTCTTGGAGTTAAAATCGATGGAAGCAGGAAAGCCTGATGTTGACTATGACTACTCAGATGAAAATGAATGTATGAAC GAGTGCCTTAGCAAATGCTACTGCCAAGCATATTCTTATCAGAAGGCTGAAAAGGGGGATAATAATTTTACATGCTGGATTTGGTTTAAGGATCTCATCA ACGTTCAGGAGCAGTATGAGGGGGGTCGTGACCTCAATGTCCGTGTGCCACTTTCAGTTATAGCATCGGTGAAAAGAAAATGTCAGATTTGCGGCACTAC CATAATCCCCTACCCGCTAAGCACTGGACCAAACTGTGGCGATAAAATGTACTTCAGCTTCCACTGTGATGATTCCAGTGGCCAGCTTAGCTTTGAGATA CCTGGTGGTGCCTACTATAGTGTAACTGGCATTGATGAAGAGTTGCAAAAGTTTTCAATACATGTTGAAGATGCAGATTGTAAAGCTATCGAGTCGATGG GAAACTATACGCAGCGCAACCAGTCCTGGCCATTTCATGTAATTGGAAGATGCGACGCTAACCGTAGTAATATTTTATTAGGTTCTTCATTTGAAGATAC AGGATTTGCTGAAGTTGAAATCCGGTGGGCTAAACCATCTGAACCACTCTGTAACTCACTCGATGAATGCAATGACTGGCCACATTCAACCTGCAGTTCT GCAACAGATGGGACGAAGAGGTGCCTTTGCAATAAATCCTTTTGGTGGGATCCCAAAACGGTCAATTGCATTTCAGCATCTACAAAGAAAAGGAGGTCAT TATATCTAGTTTTACTTGGAGTTATTGCAGCTTCTGTAATCATCCTATGTGCTTCCTTCTTTCTGTATCATTTGCGAAGATCAACGAAGGTTACTGGTCG AGAAAACAGAGAAAACAATCAGGGGAATGTAGCATTTCACTTGAATGACACAGAGAGACGACCCCGGGATTTGATATATGCTGACCATTTCACTGTAGAT GATAAGAAAGGCATAGATGTACCATTTTTTGACATGGAATGCATACTAGCTGCTACAGATAACTTCTCGGGTGCAAACAAGCTAGGACAGGGGGGTTTTG GGCCTGTTTACAAGGGAAAGTTACCTGGAGGCCAAGAAATAGCTATAAAAAGACTTTCTTATGGTTCAGGGCAAGGCTTGGAGGAATTCAAGAATGAAAT TACATTGATCGTCAAACTTCAACATCGTAATCTTGTTAGACTTTTGGGATACTGTGCAGAAGGATGTGAGAAAATGTTACTCTATGAATACATGCCAAAC AAAAGCTTGGATGTCTTCATATTTGATCGGACGCTGTGCATGTTATTAAATTGGGAACTGCGCTTTAACATTATCATGGGAATCGCTCGAGGACTGCTTT ATCTTCACCGCGATTCAAGGCTGAAGATCATTCACAGAGACTTGAAAACAAGCAATGTCCTCTTAGATGAGGAGATGAACCCCAAAATTTCTGATTTCGG CTTGGCAAGGATCTTAAGAGGCAAACAAACAGAGGCAAATACACAGAGAGTTGTTGGGACTTACGGCTACATGGCACCGGAGTATGCAATGGATGGGGAT TTCTCAACGAAGTCTGATGTCTTTAGCTTCGGTGTGGTTGTACTTGAAATTCTCAGTGGAAAAAGAAATGCGGCATTTTACAAGTCTGATCAAAATTTTA GCCTCTCAGCTTATGCCTGGAGGTTGTGGAAAGAGGAAAAGGTACTGGATTTGATGGACCGAGCATTATGCGAAACTTGTGACGCAAATGAATTTGTGAG GTGTGTGAATGTTGGCCTCTTATGTGTGCAAGAACATCAATGGGATCGTCCCACCATGTCAAACGTAGTTTTCATGCTTGGAAGTGACACTGCATCTCTA CCAACTCCTAAGAAACCAGCATTTGCAGCAAGCAGATCCCTCTTCAACACAGCTTCTTCTTCTAGCAATGCAGATTCATACGTCGATTTAACAAATACGT TAGAGCAAGGAAGATAA
AA sequence Show only first row Show all	>Potri.019G120000.1 pacid=42774183 polypeptide=Potri.019G120000.1.p locus=Potri.019G120000 ID=Potri.019G120000.1.v4.1 annot-version=v4.1 MMDVKERTRIQTAHITISATNMVSSIFSSFTLFLFLSSWMCSARDNMTSSTPLRDEMGHTLVSSGERFELGFFTPYGRNDGKKYLGIRYRYSPQTVVWVA NRENPLDNSRGVFSLEQDGNLQVMDGNRTSYWSARIESTSSSFSFTRRLKLMDSGNLVLIQEAANGSAILWQSFDYPTDTFLPGMKMDKNFMLTSWKSSI DPASGDFKFQLDERENQYIIMKNGSIPYWKSGVSGSSVRSDERLWLVSNLLMNSSRKPSRPLGNTTTTNGSPYNKINSTAVNYNNARLVMNFDGQIKFFL WRNVTWTLNWWEPSDRCSLFDACGTFSSCNSLNRIPCKCLPGFQPKSPDNWKLGNFSEGCERMSPLCSKDVVQNFLELKSMEAGKPDVDYDYSDENECMN ECLSKCYCQAYSYQKAEKGDNNFTCWIWFKDLINVQEQYEGGRDLNVRVPLSVIASVKRKCQICGTTIIPYPLSTGPNCGDKMYFSFHCDDSSGQLSFEI PGGAYYSVTGIDEELQKFSIHVEDADCKAIESMGNYTQRNQSWPFHVIGRCDANRSNILLGSSFEDTGFAEVEIRWAKPSEPLCNSLDECNDWPHSTCSS ATDGTKRCLCNKSFWWDPKTVNCISASTKKRRSLYLVLLGVIAASVIILCASFFLYHLRRSTKVTGRENRENNQGNVAFHLNDTERRPRDLIYADHFTVD DKKGIDVPFFDMECILAATDNFSGANKLGQGGFGPVYKGKLPGGQEIAIKRLSYGSGQGLEEFKNEITLIVKLQHRNLVRLLGYCAEGCEKMLLYEYMPN KSLDVFIFDRTLCMLLNWELRFNIIMGIARGLLYLHRDSRLKIIHRDLKTSNVLLDEEMNPKISDFGLARILRGKQTEANTQRVVGTYGYMAPEYAMDGD FSTKSDVFSFGVVVLEILSGKRNAAFYKSDQNFSLSAYAWRLWKEEKVLDLMDRALCETCDANEFVRCVNVGLLCVQEHQWDRPTMSNVVFMLGSDTASL PTPKKPAFAASRSLFNTASSSSNADSYVDLTNTLEQGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03230			S-locus lectin protein kinase ...		Potri.019G120000 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	1.00	0.9807
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G065300 [exp]	1.41	0.9726
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039300 [exp]	2.44	0.9678
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144600 [exp]	6.32	0.9643
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G063900 [exp]	7.07	0.9628
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145512 [exp]	8.77	0.9545
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G020600 [exp]	8.94	0.9523
AT5G24010			Protein kinase superfamily pro...		Potri.005G144100 [exp]	9.48	0.9524
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	10.58	0.9541
AT5G38260			Protein kinase superfamily pro...		Potri.004G097000 [exp]	11.48	0.9519

Compare expression of checked genes

Potri.019G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.