Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 630 / 0 ARK3 receptor kinase 3 (.1) AT4G21390 617 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 588 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G65800 583 / 0 ARK2 receptor kinase 2 (.1) AT1G11340 583 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 580 / 0 ARK1 receptor kinase 1 (.1) AT1G61500 573 / 0 S-locus lectin protein kinase family protein (.1) AT1G61550 569 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 566 / 0 S-locus lectin protein kinase family protein (.1) AT1G61380 566 / 0 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150900 [exp] 1241 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 649 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 646 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.004G027400 [exp] 645 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 642 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G028300 [exp] 639 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 639 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 633 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039000 [exp] 632 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033743 [exp] 646 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10028782 [exp] 640 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039731 [exp] 635 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039733 [exp] 632 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 629 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10033741 [exp] 628 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10018516 [exp] 625 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039767 [exp] 621 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 617 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031603 [exp] 614 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G120300.1 pacid=42773408 polypeptide=Potri.019G120300.1.p locus=Potri.019G120300 ID=Potri.019G120300.1.v4.1 annot-version=v4.1 ATGTCAATCTCAGTTTCTCTATTGCCAATCGGTGCAGGTGAAGGGATTATAGTTCCAGGCAGATATGTCAGTGCAAATCAATCCATAATTTCTGCTAGTG GAACTTTTGCTCTAGGCTTCTTTAGTGCGGGAAATTCAACTCCAAGGTACTATCTTGGCATTTGGTATAACAAAATTCAGAAGAAATCTGTTGTCTGGGT TGCGAATAGAGAATCCCCTACTGATTCTCTAGGAACTTTCTCACTCGGGGTCGATGGAAATCTAGTGGTTTTGGATGCAGCAGGGAAAACTGTTTGGTCA TCTAATGTAAAGATTGCTCATTCAGCTATAAATAGCATGATGGGTGTCCTAATGGATAGTGGAAACTTTTTATTGAGAAGTGGGGAAACCATCCTGTGGC AGAGCTTTGATCATCCGTCGGATACGTTCTTGCCTGGCATGAAAGTTGGCAATAATCGCAAAACTGGTCAAAGAAGGCAGCTTACATCTTGGATAGACGC TGAAGATCCACAACCAGGATTATTCTCTTTCGGCTTGGATACGACGGGACCTCTGCAGTTTTTCATATGGAAGGATCATGTTCCTTATAGCCGAACCAAT GTCTACAGCAATTCTATGTCATTAACGAAGTTATCCCGATGGCTACCTTTTGCTTATTACATTACTGTGAAGTTAGAGGGTGATGATATTTATCTTTCTT ACAGTATCTCAGATATCTCAGCTATATTAAGGATCACACTAGTCCCTAATGGGCGACTTGAGGCTCTGATATGGGAGGAGAAAAACAGTAAATGGTTTTC TATGTGGCAGTGGCCTAAAGTTTACTGTGATTTCTATGGTCATTGCAGTCCATTTAGTAGCTGTGACAAAAAAGGTTCTCCAGTTTATTGCAAATGTTTG ACAGGTTTCCAGCCAAAAGTTCAGCAAGAGTGGCATATGACGAATTGGACCAGTGACACTTGGGTGAGGCAAAAGGCACTAACATGTGACAAGGGTGATG GGTTTTTGAAGATTGAAACTATCAAATTACCAGATCATTCGTATCTAGTGGAAAATATGAGTGCCAATGATTGTGAATCAAGGTGCCTACAAAATTGCTC CTGCACAGCTTATGCACTTGTCAATGCAAGTCAAGGAAACTCAGTTAACTGCCTGAGCTGGTATGGGGACTTGATGGATATTGTACATGACATTGAAGGG CAAATTCTTTACGTTCGTGTTCATGACAGAGAACTTGTTGAAAATGATGGAAGTAGTGATAACTTTTCCAGTAGACGCAAGCGCTCTATTATAATTCTAG TAGCGGTAATTTCTTTAGGGGTTCTTACTGTTCTATCTGGCTATTTCACCTGGAGAAAAAGATTTGGAAAACAAGAGATAATTGAAGAGAGTTTTACTGG GACCAGCACCACTATTGGAGGAGAAGCTGGTAATGGTGACACGGAGCTGAACATATTTAGCTTGAACAGAATACAGGCTGCCACAAATGACTTCTCTGAA GATAATAAACTGGGAGAGGGTGGTTTTGGCACTGTTTATAAGGGAGATTTGGCAATTCAAGAAGTTGCAATAAAAAGGCTTTCTAAGAAATCTGGACAAG GACTAGAAGAGTTCATGAATGAGTCAAAACTTATTTCTAAGCTCCAACACACTAATCTTGTGAGACTCTTAGGTTGCTGTGCTGAAGGGGAGGAGAGAAT ATTGGTGTACGAATACATGCGGAATCGAAGCCTGGATAAGTTTTTGTTTGATCCTTCTGAAAAGGCAAACCTTAATTGGAGCAAACGTTTTCGAATCATC GAGGGCATTGCTCAAGGTCTCCTTTACCTTCACAAGTACTCTAGATTGAAAGTGATCCACAGGGACCTAAAGGCAAGTAACATATTACTGGATGATGTAA TGAATCCTAAGATTTCAGATTTTGGATTGGCAAGGATGTTTGGATCTGACCAAACCGAAGCAGATACCAAACGGGTGGTTGGTACTTATGGCTACATGTC ACCCGAATATGCACAATATGGAAAATTCTCAGAAAAATCAGATGTCTTCAGCTTTGGAGTTTTGCTATTAGAGATTGTGACCGGTAAGAGAAATGCTGAA TTTTTTCGCAACGATCTTCCTCAAACCCTTCAAGGATGGGCATGGGAATTGTGGAATGAAGCTAGAGGACTAGACCTTATCGATCCATCGATAAAGGACT CATTTGAAAGTCCTGACAGAATTTTCAGGTGCATCCATGTAGGGCTTTTGTGTGTTCAGGAATCTCCAGCTGATAGACCTACGATGCCATTAGTGGTTCA GATGTTGAGCAATGACAATGCATCACTTCCTTCTCCAAAAGAACCTGCATTCTCTAGTCTTAGTCGTCAGAGATCTAGCAATTTTGTTGCCTTTCACAAC ACATCAACTATATATTCTAACAACGAATTGACAATTAGCCTGCCTGAGGCTCGATAA
AA sequence Show only first row Show all	>Potri.019G120300.1 pacid=42773408 polypeptide=Potri.019G120300.1.p locus=Potri.019G120300 ID=Potri.019G120300.1.v4.1 annot-version=v4.1 MSISVSLLPIGAGEGIIVPGRYVSANQSIISASGTFALGFFSAGNSTPRYYLGIWYNKIQKKSVVWVANRESPTDSLGTFSLGVDGNLVVLDAAGKTVWS SNVKIAHSAINSMMGVLMDSGNFLLRSGETILWQSFDHPSDTFLPGMKVGNNRKTGQRRQLTSWIDAEDPQPGLFSFGLDTTGPLQFFIWKDHVPYSRTN VYSNSMSLTKLSRWLPFAYYITVKLEGDDIYLSYSISDISAILRITLVPNGRLEALIWEEKNSKWFSMWQWPKVYCDFYGHCSPFSSCDKKGSPVYCKCL TGFQPKVQQEWHMTNWTSDTWVRQKALTCDKGDGFLKIETIKLPDHSYLVENMSANDCESRCLQNCSCTAYALVNASQGNSVNCLSWYGDLMDIVHDIEG QILYVRVHDRELVENDGSSDNFSSRRKRSIIILVAVISLGVLTVLSGYFTWRKRFGKQEIIEESFTGTSTTIGGEAGNGDTELNIFSLNRIQAATNDFSE DNKLGEGGFGTVYKGDLAIQEVAIKRLSKKSGQGLEEFMNESKLISKLQHTNLVRLLGCCAEGEERILVYEYMRNRSLDKFLFDPSEKANLNWSKRFRII EGIAQGLLYLHKYSRLKVIHRDLKASNILLDDVMNPKISDFGLARMFGSDQTEADTKRVVGTYGYMSPEYAQYGKFSEKSDVFSFGVLLLEIVTGKRNAE FFRNDLPQTLQGWAWELWNEARGLDLIDPSIKDSFESPDRIFRCIHVGLLCVQESPADRPTMPLVVQMLSNDNASLPSPKEPAFSSLSRQRSSNFVAFHN TSTIYSNNELTISLPEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.019G120300 [exp]	0	1
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Potri.010G135100 [exp]	4.79	0.9271
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.007G123900 [exp]	18.00	0.8996
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015500 [exp]	18.70	0.8911
AT3G48940			Remorin family protein (.1)		Potri.012G140900 [exp]	23.36	0.8869
AT3G27180			S-adenosyl-L-methionine-depend...		Potri.001G331900 [exp]	24.57	0.9010
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015601 [exp]	25.69	0.8864
AT1G71240			Plant protein of unknown funct...		Potri.001G210200 [exp]	25.74	0.8700
					Potri.001G341700 [exp]	26.40	0.8858
					Potri.001G076700 [exp]	27.49	0.8755
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Potri.009G045601 [exp]	28.56	0.8802

Compare expression of checked genes

Potri.019G120300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.