Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54490 146 / 1e-46 PBP1 pinoid-binding protein 1 (.1) AT4G27280 144 / 9e-46 Calcium-binding EF-hand family protein (.1) AT2G46600 127 / 5e-39 Calcium-binding EF-hand family protein (.1) AT3G50360 51 / 7e-09 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT2G27030 42 / 1e-05 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 42 / 2e-05 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G22930 42 / 2e-05 CML11 calmodulin-like 11 (.1) AT4G14640 41 / 2e-05 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT5G21274 41 / 2e-05 ACAM-6, CAM6 calmodulin 6 (.1) AT3G56800 41 / 2e-05 ACAM-3, CAM3 calmodulin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151000 [exp] 212 / 1e-72 AT5G54490 147 / 7e-47 pinoid-binding protein 1 (.1) Potri.011G129100 [exp] 162 / 4e-53 AT4G27280 124 / 5e-38 Calcium-binding EF-hand family protein (.1) Potri.001G412077 [exp] 159 / 7e-52 AT4G27280 117 / 4e-35 Calcium-binding EF-hand family protein (.1) Potri.011G039600 [exp] 138 / 1e-43 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.011G039500 [exp] 138 / 1e-43 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.004G027200 [exp] 133 / 1e-41 AT5G54490 127 / 3e-39 pinoid-binding protein 1 (.1) Potri.011G125300 [exp] 132 / 2e-41 AT5G54490 122 / 5e-37 pinoid-binding protein 1 (.1) Potri.001G414600 [exp] 131 / 1e-40 AT5G54490 118 / 1e-35 pinoid-binding protein 1 (.1) Potri.014G101700 [exp] 129 / 7e-40 AT2G46600 181 / 3e-60 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018511 [exp] 175 / 4e-58 AT4G27280 140 / 2e-44 Calcium-binding EF-hand family protein (.1) Lus10039724 [exp] 173 / 2e-57 AT4G27280 139 / 1e-43 Calcium-binding EF-hand family protein (.1) Lus10031588 [exp] 167 / 1e-54 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10033753 [exp] 166 / 1e-54 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10036734 [exp] 135 / 1e-42 AT5G54490 107 / 2e-31 pinoid-binding protein 1 (.1) Lus10030227 [exp] 123 / 2e-37 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10005985 [exp] 123 / 2e-37 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10019349 [exp] 51 / 2e-08 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10027243 [exp] 42 / 3e-05 AT1G18530 208 / 5e-70 EF hand calcium-binding protein family (.1) Lus10022589 [exp] 41 / 4e-05 AT3G43810 255 / 2e-88 calmodulin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.019G120600.1 pacid=42773823 polypeptide=Potri.019G120600.1.p locus=Potri.019G120600 ID=Potri.019G120600.1.v4.1 annot-version=v4.1 ATGGCAGGAGCTGATAAAAGAGCAGATTTTGAAGACTTGTTGCCTGTAATGGCAAACAAGCTAGGTGGGGAAGGGTTGATAAACGAGCTGTGTAATGGGT TTCAGCTGTTGATGGATAAAGATAGAGGGGTTATTACCATGGAGAGTTTGAAAAAGAATGCAGCTTTCTTGGGTTTGCAAGATTTGAGTGAGGATGAGCT TGTTAGTATGGTTAAAGAAGGTGATCTTGACCGTGATGGGGCTTTAAATCAAATGGAGTTTTGTGTTTTGATGTTTAGACTGAGTCCTGAATTGATGCAA GAATCAAGATTTTGGCTTGAAGAAGCACTTGAAGAGGAGCTCAAGGGTTATGGATTTTGA
AA sequence Show only first row Show all	>Potri.019G120600.1 pacid=42773823 polypeptide=Potri.019G120600.1.p locus=Potri.019G120600 ID=Potri.019G120600.1.v4.1 annot-version=v4.1 MAGADKRADFEDLLPVMANKLGGEGLINELCNGFQLLMDKDRGVITMESLKKNAAFLGLQDLSEDELVSMVKEGDLDRDGALNQMEFCVLMFRLSPELMQ ESRFWLEEALEEELKGYGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.019G120600 [exp]	0	1
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Potri.001G110800 [exp]	3.46	0.9636
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.002G128900 [exp]	6.32	0.9719
AT5G36930			Disease resistance protein (TI...		Potri.019G003285 [exp]	9.48	0.9596
AT5G37490			ARM repeat superfamily protein...		Potri.015G031000 [exp]	10.58	0.9604
AT1G11050			Protein kinase superfamily pro...		Potri.005G181800 [exp]	12.72	0.9710
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	13.26	0.9653
AT1G13930			unknown protein		Potri.008G093200 [exp]	17.32	0.8570
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046700 [exp]	18.16	0.9636
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.002G150600 [exp]	19.49	0.9584
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.005G095250 [exp]	19.62	0.9634

Compare expression of checked genes

Potri.019G120600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.