Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30260 305 / 7e-106 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT1G06960 298 / 3e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G47580 211 / 1e-68 U1A spliceosomal protein U1A (.1) AT5G12190 48 / 3e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G12640 46 / 1e-05 RNA recognition motif (RRM)-containing protein (.1) AT3G13700 45 / 2e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G21215 44 / 5e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G21320 43 / 6e-05 nucleotide binding;nucleic acid binding (.1.2) AT1G09230 44 / 7e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G76940 41 / 0.0003 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G153700 [exp] 389 / 8e-139 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.014G127800 [exp] 231 / 1e-76 AT2G47580 347 / 6e-122 spliceosomal protein U1A (.1) Potri.002G203600 [exp] 225 / 5e-74 AT2G47580 349 / 1e-122 spliceosomal protein U1A (.1) Potri.012G019300 [exp] 53 / 2e-08 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 52 / 6e-08 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G224900 [exp] 52 / 7e-08 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.001G273200 [exp] 48 / 3e-07 AT5G12190 227 / 1e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G035000 [exp] 49 / 1e-06 AT3G13700 348 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.013G054300 [exp] 49 / 2e-06 AT1G09230 253 / 3e-79 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026413 [exp] 349 / 4e-123 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1) Lus10042240 [exp] 345 / 2e-121 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10008424 [exp] 224 / 1e-73 AT2G47580 365 / 4e-129 spliceosomal protein U1A (.1) Lus10003358 [exp] 221 / 2e-72 AT2G47580 367 / 7e-130 spliceosomal protein U1A (.1) Lus10026814 [exp] 48 / 5e-07 AT5G12190 225 / 8e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10016372 [exp] 40 / 0.001 AT1G09230 392 / 1e-132 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.019G121400.1 pacid=42774004 polypeptide=Potri.019G121400.1.p locus=Potri.019G121400 ID=Potri.019G121400.1.v4.1 annot-version=v4.1 ATGCTAACAGGGGACATACCACCGAACCAAACAATTTACATTAAGAACCTCAACGAGAAGGTCAAGAAAGAAGAGTTGAAGAGGTCACTTTATTGTCTGT TCTCTCAATATGGGAGGATTTTGGATGTTGTTGCTTTGAAGACGGCGAGGCTTCGAGGGCAAGCATGGGTAGTGTTTAGTGAAGTTACGGCTGCGAGTAA TGCTGTGCGACAGATGCAGGGTTTTCCGTTTTATGATAAACCTATGCGGATTCAATATGCAAAAACAAAGTCTGATTGCATTGCAGAAGCAGAAGGAGTC TATGATCCAAATGCAAAGAAGAAGAAGAAGCAAGAGGAAAAAGCTGAGAGAAAGAAACGTGCTGAAGAAGCTCAGCAATCAGCTCCAGCTAATGGGAAAC CTGCTGAAAGTAATGGGGGCCCAACTTCTTTCCGCCAAGGAAACCAGAGTGCACAGGAAACCGTTCCACCAAATAATATATTGTTTATTCAAAACTTGCC CCATGAAACCACTAGCATGATGTTGCAAGTGCTCTTCCAGCAATACCCAGGATTTAGGGAAGTCCGTATGATTGAGGCAAAGCCAGGTATCGCATTTGTG GAATTTGAAGATGATGTGCAATCCTCCATGGCCATGCAGGCCCTTCAAGGTTTCAAAATTACTCCCCAGAACCCTATGGCTATTACTTACGCCAAGAAGT AA
AA sequence Show only first row Show all	>Potri.019G121400.1 pacid=42774004 polypeptide=Potri.019G121400.1.p locus=Potri.019G121400 ID=Potri.019G121400.1.v4.1 annot-version=v4.1 MLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTARLRGQAWVVFSEVTAASNAVRQMQGFPFYDKPMRIQYAKTKSDCIAEAEGV YDPNAKKKKKQEEKAERKKRAEEAQQSAPANGKPAESNGGPTSFRQGNQSAQETVPPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFV EFEDDVQSSMAMQALQGFKITPQNPMAITYAKK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Potri.019G121400 [exp]	0	1
AT3G06610			DNA-binding enhancer protein-r...		Potri.008G105000 [exp]	1.41	0.8860
AT3G21860		ASK10	SKP1-like 10 (.1)		Potri.005G094800 [exp]	3.16	0.7968
AT5G46160			Ribosomal protein L14p/L23e fa...		Potri.010G022800 [exp]	7.74	0.7879	RPL14.1
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Potri.009G097600 [exp]	8.36	0.7785	RPB36.2
AT5G07900			Mitochondrial transcription te...		Potri.001G030300 [exp]	9.38	0.7036
AT5G40190			RNA ligase/cyclic nucleotide p...		Potri.017G073800 [exp]	10.19	0.7977
AT4G03120			C2H2 and C2HC zinc fingers sup...		Potri.003G058400 [exp]	11.48	0.7995
AT4G39880			Ribosomal protein L23/L15e fam...		Potri.007G093100 [exp]	17.34	0.7040
AT2G01640			unknown protein		Potri.009G097000 [exp]	18.97	0.7426
AT5G64680			unknown protein		Potri.001G068500 [exp]	20.44	0.7758

Compare expression of checked genes

Potri.019G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.