Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01720 603 / 0 RNI-like superfamily protein (.1) AT5G27920 331 / 2e-104 F-box family protein (.1) AT4G15475 130 / 2e-31 F-box/RNI-like superfamily protein (.1) AT2G25490 110 / 3e-25 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 104 / 5e-23 EBF2 EIN3-binding F box protein 2 (.1) AT5G23340 88 / 3e-18 RNI-like superfamily protein (.1) AT3G58530 75 / 4e-14 RNI-like superfamily protein (.1) AT1G21410 72 / 3e-13 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 71 / 5e-13 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G80570 66 / 4e-11 RNI-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128400 [exp] 798 / 0 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 773 / 0 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 386 / 2e-125 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 364 / 5e-117 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 119 / 5e-28 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 111 / 3e-25 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 97 / 1e-20 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 96 / 2e-20 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 78 / 5e-15 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001264 [exp] 742 / 0 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 711 / 0 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 291 / 3e-91 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10012764 [exp] 150 / 2e-37 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 105 / 4e-23 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002014 [exp] 102 / 2e-22 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 102 / 3e-22 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 99 / 3e-21 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 97 / 9e-21 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10013444 [exp] 92 / 1e-19 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G123400.1 pacid=42773676 polypeptide=Potri.019G123400.1.p locus=Potri.019G123400 ID=Potri.019G123400.1.v4.1 annot-version=v4.1 ATGAGAACCAACAAGAAAACCACTTGCAATTGCAACCCTTTTGATTTTCTCACTGAAGAGATCATTTTTACAATCCTTGACTATCTTAACGATGACCCTT TTGCTAAAAAGTCGTTTTCTTTAACCTGCAAAGCCTTTTACTCCATTGAATCTCACCATAGAAAGACCCTTAAGCCACTTAGAGCTGAGCTTTTATTAAG AACCCTTCATAGGTACCCTCATATTGAACATCTTGATCTAACTGTTTGCCCTCGCATTGAAGACAGGATGTTGAATGTTGTTTCATTGGCATGTAAGGAT GCTTTGTGTTCCATAAACCTGTCAAGATCAAGGTTTTTTACTAATATTGGGTTGTCAAGTTTGGTTTCAAGTTGTTTCAATTTGGTTGAGATTGATTTGT CAAATGGGGTAGAGTTGAATGACTTGGCTGCTGCTGCAATTGCTGAGGCTAAGAATTTGGAGAAGTTGTGGCTGGCCAGGTGTAAGTTGATTACTGATCT GGGGATTGGGTGTGTTGCTGTTGGCTGTAGAAAGTTGAGGTTGATTTGCTTGAAATGGTGTTTGAAGATTAGTGATCTTGGTGTGCAGTTGCTTGCTTTG AAATGTAAGGAGATTAGGAGTTTGGATCTCTCTTACCTACAGATTACAGAGAAATGTCTTCCATCTATCTTGCAGTTGCAGCATCTTGAAGATCTAGTTC TTGAGGGATGCCTTGGTATTAATGATGATGGCCTCTCTACTCTCCAACAGAGTTGCAAGTCACTCAAGACATTTAATATGTCCAACTGTCATAATCACAG TCATGTGGGTTTGTTGTCTCTGATAAATGGTGCTGAAAATCTACGAGAACTTACTTTAGCTTATGGCCCTTCTGTAACTGCAGATCTGGCAAAATGTTTG CATAACTTTTCAGGGTTGCATTCGGTTAAGTTTGATGGCTGTTTGGTTAAATGTTCCGGTATTAGAGCCATTGGAAATTGGCCTAACTCACTCAAGGAAT TGAGCTTCAGTAAGTGCTCAGGGGTCGCAGACGACAGTCTATCCTTCTTAGTGCAAGGACACAAAGAATTGAGGAAGTTAGATATCACATGCTGTCGCAT GATAATGTACGACTCTGTAGACAGCATAACAAGCTCATGCTGTTCTCTCACTTCCCTCAGAATGGAGTCCTGTAGCCTGGTTCCCAAAGAAGCATTTGTC TTGTTTGGACAGCGTTGTCAACTTATGGAGGAATTAGATGTCACAGATACCAAAATCGATGACGAAGGTTTGAAGTCCATCTCAAGATGTTCCAAACTTT CAAGTTTAAAGTTAGGCATTTGCATGAACATAACCGACAATGGACTAAAACATATTGGAAGCAGATGTTCAAAGCTCAAAGAGCTTGATTTGTATAGGTC ATTGGGAATAACTGATGAGGGCATTGCAGCAGTTACTTTTGGATGTCCTGATCTGGAGGTCATTAACATAGCTTACAATGATAAAGTTACAGATGCTTCA TTAATATCATTATCAAGATGTTCAAGGTTAAGAGTGCTTGAGATCAGAGGATGTCCTCATGTCTCATCAAAAGGTCTATCAGCTATTGCTGTCGGATGTA GGCAACTTATGGTGCTGGACATTAAGAAGTGCTTCAATATCAATGATACTGCAATGCTCTCACTTGCTCAGTTTTCCCAAAACCTCAAACAGATAAACTT GTCGTATTGTTCGGTAACAGATGTTGGCCTTTTGGCACTAGCCAGCGTGAATCGCCTTCAGAACATAACTGTGTTACACTTGGGAGGATTAACTCCAAAT GGCTTGGCAGCTGCTCTATTAGCTTGTAGAGGAATAACTAAAGTGAAGCTACATGCTTCCTTCAAACCATTAATTCCTAAATCCCTTCTCGGTTACATCG AAGCCCATGGCTGTGTATTTCATTGGAGAGATAAAGCATTCCAGGTGGAGATGGATACAAAGGGATGGAAGTTACATTTTGGGAAAAGTGCTGAAGCTCC ATAG
AA sequence Show only first row Show all	>Potri.019G123400.1 pacid=42773676 polypeptide=Potri.019G123400.1.p locus=Potri.019G123400 ID=Potri.019G123400.1.v4.1 annot-version=v4.1 MRTNKKTTCNCNPFDFLTEEIIFTILDYLNDDPFAKKSFSLTCKAFYSIESHHRKTLKPLRAELLLRTLHRYPHIEHLDLTVCPRIEDRMLNVVSLACKD ALCSINLSRSRFFTNIGLSSLVSSCFNLVEIDLSNGVELNDLAAAAIAEAKNLEKLWLARCKLITDLGIGCVAVGCRKLRLICLKWCLKISDLGVQLLAL KCKEIRSLDLSYLQITEKCLPSILQLQHLEDLVLEGCLGINDDGLSTLQQSCKSLKTFNMSNCHNHSHVGLLSLINGAENLRELTLAYGPSVTADLAKCL HNFSGLHSVKFDGCLVKCSGIRAIGNWPNSLKELSFSKCSGVADDSLSFLVQGHKELRKLDITCCRMIMYDSVDSITSSCCSLTSLRMESCSLVPKEAFV LFGQRCQLMEELDVTDTKIDDEGLKSISRCSKLSSLKLGICMNITDNGLKHIGSRCSKLKELDLYRSLGITDEGIAAVTFGCPDLEVINIAYNDKVTDAS LISLSRCSRLRVLEIRGCPHVSSKGLSAIAVGCRQLMVLDIKKCFNINDTAMLSLAQFSQNLKQINLSYCSVTDVGLLALASVNRLQNITVLHLGGLTPN GLAAALLACRGITKVKLHASFKPLIPKSLLGYIEAHGCVFHWRDKAFQVEMDTKGWKLHFGKSAEAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01720			RNI-like superfamily protein (...		Potri.019G123400 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.001G365300 [exp]	5.65	0.6741
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.010G217700 [exp]	15.58	0.6150	LBD11.1
AT1G76210			Arabidopsis protein of unknown...		Potri.005G248700 [exp]	16.49	0.5937
AT1G75717			unknown protein		Potri.005G238400 [exp]	17.20	0.6616
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G112900 [exp]	20.00	0.6108
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	25.21	0.6257
					Potri.019G129532 [exp]	28.37	0.6220
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Potri.010G185400 [exp]	37.76	0.5474
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113300 [exp]	40.29	0.5733
AT5G59520		ZIP2	ZRT/IRT-like protein 2 (.1)		Potri.009G034600 [exp]	43.49	0.6063

Compare expression of checked genes

Potri.019G123400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.