Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 536 / 4e-179 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 446 / 1e-144 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 427 / 4e-137 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT3G17630 389 / 8e-123 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 388 / 2e-122 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT5G41610 380 / 1e-119 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT1G05580 370 / 4e-115 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 354 / 2e-109 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT3G44900 348 / 2e-107 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT3G53720 346 / 2e-106 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105200 [exp] 523 / 4e-174 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 437 / 6e-142 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 432 / 2e-139 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 423 / 3e-136 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.013G153200 [exp] 419 / 3e-134 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 410 / 3e-131 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.013G142301 [exp] 409 / 1e-130 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 409 / 2e-130 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.006G176400 [exp] 408 / 2e-130 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030013 [exp] 525 / 2e-174 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 522 / 8e-173 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10026408 [exp] 454 / 3e-147 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 422 / 1e-134 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10043128 [exp] 388 / 2e-122 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10032332 [exp] 386 / 2e-121 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10031283 [exp] 378 / 3e-118 AT5G37060 672 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10026398 [exp] 367 / 8e-114 AT5G37060 649 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10042254 [exp] 365 / 5e-113 AT5G37060 659 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10040881 [exp] 354 / 7e-109 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.019G123700.1 pacid=42774054 polypeptide=Potri.019G123700.1.p locus=Potri.019G123700 ID=Potri.019G123700.1.v4.1 annot-version=v4.1 ATGTCACAGATAAATAATTCATCTACGCAGTTTCAGAACCCTTCAAGACTTCGTTTCGATGAGGAAGTTAGAGTTGGGATTCATGTTGTCTGTCAGCATG TTGATATGATTAACTCTAGAGGCCTCTGGTTTCATGATGACCCTTTAGAGTACACTTTGCCTCTCTTGCTGTTACAACTCTCTCTTATTTCTATCATCAC ACGTTCCATTTACATCTTTCTCAAGCCCCTTGGCCAGCCTTCCATTGTTTCTCATATTCTTGGAGGGGTAATTCTAGGTCCTTCTATTCTCGGGCACAAC TTGGCATTTATGAACAAAATCTTCCCACGAGAAGGAAGAATTACACTCGAGACCTTGTCAGTGTTTGGCATCATGCTGTTTATCTTCCAGGTTGGGGTGA AGATAGATCCTTCCATCGTTTGGAAATCAGGTAAACGAGCGCTGATCGTAGGAATTCTAGGCTTCTTCATTCCATTTGCTTTGGCTTCATCTATCAGATT ACTCCTATGCCATTCTATCTCACTGGATGACACTGTGTGCCATGTGCTCCAGCTAGTGGTATTAATGCAGTCTGTTACAGCCTTCCCAGTTATTGCTATC TTTCTTGCTGAGTTCAAGATACTTAATTCTGATATTGGAAGACTTGCTAGTTCTTCATCAATGATATGTGACATGTGCTTTTGGTCCTTTATGTCGATAT TCTATGTGGCACATGTAGCTAAAGAAAAATCAATGCAATCAGCAATTGGCTCTATTCTATCAGTTGGATTCCTTGTTTATCTTTTGTTATTTGGAATCCG TCCTGCAGCTTTGTGGGCAATTCGAAATACTCCAGAAGGTAAACCTGTGAAAGATGCTTATATCTATGTGGTTTTTGTTGCATTAATGGGCTTCGGATTT CTTGGTGAAGTCATCGGAATAAATTCGCTTATAACAAGTTTCCTTCTGGGCTTGGTCATACCAGATGGACCACCATTGGGAGCAGCAATAGTGGACAGGC TTGATTGTTTTGTATCAGCATTGCTTATGCCCATCTTTTTCACCCTATGTGGATTAAAGACCAATGTTTTTTCCGTTCAGAAATGGAAGACCGTGGTCGT AATTCTATTGGTTGTTTTCATTGGTTTCTTGGGAAAAATTATAGGCACAATGCTACCTCCTCTATTCTGCAGAATGCCATTTCGAGATGCCCTTGCTCTA GGTCTTCTCATGAACTCCAAAGGCATTGTTGAACTTGTCCTGTTGAATGACTGGAAGACAAACAGTGACAGCATGACCGATGAATGCTTCGCCATTATGA TTCTCTCTGTGGTGGTTTTAATAGGAGTAATCTCACCACTTGTGAAAGCTCTTTATGATCCTTCGAGGAGGTTTCTGGCTTACAGGAGGAGGACTATACG CCATCATCAAAGGAACGAAGAACTACGGATTCTCGCTTGTGTTCTTAGCCAAGATAATGTCCAGACAATTATCAACCTTCTTGATGTCTCGAACCACACC AACGATAACCCTATTGGTATATATGTCCTCCACCTCATCAAGCTAGTTGGACGTGCTTCCTCTCTACTGATCACACACCTTCCACGCGAAAAACCTTCTC AAAACCCTACTGAGTCAGAAAGAATCTTCAACGCATTTAAAAAATTCGAACATGAAAATTGCAGTCATGCTGCTCTGCATTGCTGTAAAAGCATTTCGCC TTATGAAACTATGCACAATGATGTGTGCTCCGTAGCCTTAGAGCACAGAATATCTTTCATAATTATTCCTTTTTACAAGCAGAGCATAAATGGGAAAATG GTGAACTCATTTCATGTATTCAGGCACCTGAACAAGAATGTGCTTGACAAGGCTCCTTGTTCAGTTGGGGTACTCGTCGATCGTGGGAATTTTAGGAAAT CTCTCGCGGAGCTTTTATCTTGTCGAATTGTTGTGCTATTCTTCGGTGGTGCAGATGACAGAGAAGCACTAGCTTATGCTGTGCGCATGTCAGGGAATCC TCATGTATCAGTCACACTTTTACATTTCACTACGACATCAACTTCTGAGGGTGCCGAAATTGCTGGTGGTACAGAAAGGAGCAAGAGGCTCGACTCTGAA ATATTAGATGAATACAAGTTAAACGCCGAAGAGAATGAACGTGTTTCTTACCTAGAGGAGGTAGTTATGGACAGTGAAGGTGTTCTTGCTGTGATTGAAT CAATCGAGAATTCTTATGACCTTGTCATGGTTGGGAAGCGACATGGAGAGTCAGAGTTGATGTCTAACCTTGGGAAGTGCAATGAACATATAGAGTTAGG GGCAATAGGAGAGATGCTAGCCGTCACAGATTCTAAGCTAAGAGCTTCTGTTTTGGTGGTTCAACAACAGACTAGAGTTTGGGGTTTGCGCGACGCAGAG GACTCATCACTACTAAGAAGAGAAGAAAAAGATGTTGCAGGAGTTCCTAATAGCAATGTCTATAGGATTTGA
AA sequence Show only first row Show all	>Potri.019G123700.1 pacid=42774054 polypeptide=Potri.019G123700.1.p locus=Potri.019G123700 ID=Potri.019G123700.1.v4.1 annot-version=v4.1 MSQINNSSTQFQNPSRLRFDEEVRVGIHVVCQHVDMINSRGLWFHDDPLEYTLPLLLLQLSLISIITRSIYIFLKPLGQPSIVSHILGGVILGPSILGHN LAFMNKIFPREGRITLETLSVFGIMLFIFQVGVKIDPSIVWKSGKRALIVGILGFFIPFALASSIRLLLCHSISLDDTVCHVLQLVVLMQSVTAFPVIAI FLAEFKILNSDIGRLASSSSMICDMCFWSFMSIFYVAHVAKEKSMQSAIGSILSVGFLVYLLLFGIRPAALWAIRNTPEGKPVKDAYIYVVFVALMGFGF LGEVIGINSLITSFLLGLVIPDGPPLGAAIVDRLDCFVSALLMPIFFTLCGLKTNVFSVQKWKTVVVILLVVFIGFLGKIIGTMLPPLFCRMPFRDALAL GLLMNSKGIVELVLLNDWKTNSDSMTDECFAIMILSVVVLIGVISPLVKALYDPSRRFLAYRRRTIRHHQRNEELRILACVLSQDNVQTIINLLDVSNHT NDNPIGIYVLHLIKLVGRASSLLITHLPREKPSQNPTESERIFNAFKKFEHENCSHAALHCCKSISPYETMHNDVCSVALEHRISFIIIPFYKQSINGKM VNSFHVFRHLNKNVLDKAPCSVGVLVDRGNFRKSLAELLSCRIVVLFFGGADDREALAYAVRMSGNPHVSVTLLHFTTTSTSEGAEIAGGTERSKRLDSE ILDEYKLNAEENERVSYLEEVVMDSEGVLAVIESIENSYDLVMVGKRHGESELMSNLGKCNEHIELGAIGEMLAVTDSKLRASVLVVQQQTRVWGLRDAE DSSLLRREEKDVAGVPNSNVYRI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.019G123700 [exp]	0	1
AT3G07820			Pectin lyase-like superfamily ...		Potri.007G035800 [exp]	4.24	0.7768
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.018G044100 [exp]	5.38	0.7941
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G019100 [exp]	6.63	0.7620
					Potri.003G056450 [exp]	12.00	0.7626
AT5G62065			Bifunctional inhibitor/lipid-t...		Potri.015G142100 [exp]	12.24	0.7657
					Potri.019G005913 [exp]	12.64	0.7676
					Potri.019G053150 [exp]	13.85	0.6204
AT5G66815			unknown protein		Potri.014G034500 [exp]	16.12	0.7620
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.008G181000 [exp]	19.44	0.7440
AT2G37440			DNAse I-like superfamily prote...		Potri.017G074200 [exp]	20.71	0.6745

Compare expression of checked genes

Potri.019G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.