Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07120 778 / 0 SNX2b sorting nexin 2B (.1) AT5G58440 764 / 0 SNX2a sorting nexin 2A (.1) AT5G06140 115 / 1e-27 ATSNX1 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) AT5G37050 73 / 5e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076400 [exp] 105 / 2e-24 AT5G06140 664 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.006G209600 [exp] 105 / 2e-24 AT5G06140 635 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042247 [exp] 832 / 0 AT5G07120 811 / 0.0 sorting nexin 2B (.1) Lus10026403 [exp] 745 / 0 AT5G07120 753 / 0.0 sorting nexin 2B (.1) Lus10016994 [exp] 107 / 1e-24 AT5G06140 650 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10014225 [exp] 105 / 4e-24 AT5G06140 645 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10021317 [exp] 76 / 1e-14 AT5G06140 523 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10001495 [exp] 42 / 0.0006 AT4G32160 323 / 9e-107 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [poplar] [flax] PX PX domain CL0145 [poplar] [flax] Golgi-transport PF09325 [poplar] [flax] Vps5 Vps5 C terminal like
Representative CDS sequence Show only first row Show all	>Potri.019G124200.1 pacid=42774484 polypeptide=Potri.019G124200.1.p locus=Potri.019G124200 ID=Potri.019G124200.1.v4.1 annot-version=v4.1 ATGATGGGATCAGATAATAATCAGAGCTTTCAAGACGATAAAGAAGAAATGGAATCTCTCACTCTCGACGATCCGTTATCATCCACCACTAACAGCAACT ACATGTCTTTCGCCGATTACCGATCCGCCACGTCATCACTCTCCGCCACTCACCAACTCAACCACCCTTTCTCCCCTACGGATTCCGATCCTCTCCTATC TCCACCTCCTCCGCCGTACTCTGCGACGGAATCCGGCTCGTACATCGAACCGCCGGCGTACGCAGATGTTGTTTTCAGTCCGTTTGATGAGACTTCGGTG AATGAAATCAACGGTGTGGATAGAAATCACAGTTTGAACAGATCCTCGTCGAGTGATTCGTCGCAGTCGTTCTCGATTTCGCGATCGCTTTCAACGGCGT CGAATTCGTCCTCGGATTTCATGAAAATTACGGTTTCTAACCCTCAGAAAGAGCAGGAGGCGGCGAATTCGCTTGTTCCAGGAGGTAATACTTATGTTAC GTATTTAATTACTACGCGAACGAATCTTCCTGATTTTGATAGAACCGAATTCAGTGTAAGGCGTCGTTTTAGAGATGTTGTTACGTTGTCGGACCGGTTA GCGGAGAGTTATCGGGGGTTTTTTATTCCACCGCGGCCGGATAAGAATGTGGTGGAGAGTCAGGTGATGCAGAAGCAGGAATTTGTGGAGCAAAGGAGAA TTGCATTGGAGAAGTATTTGAGGAGATTGGTTGCGCATCCTGTGATTAAGAAGAGTGATGAGTTGAAAGTGTTTTTATCGGTACAAGGGAGGTTGCCGTT GGCTACGAGTACGGATGTGGCATCTAGAATGCTTGATGGAGCGGTGAATTTGCCGAAACAGTTGTTTGGTGAGAGTGTGGCGGTTGCGCCGAGTGAGGTT GTGCAGCCGGCGAAAGGTGGGAGGGATTTGTTGAGGATTTTTAAGGAGTTGAAGCAGAGTGTTGCGAATGATTGGGGTGGCGTGAAGCCAGCTGTTGTGG AGGAAGATAAGGAGTTTTTGGAGAATAAGGAGAGGATGCAGGACCTTGAACAGCAACTTAGTAATGCTTCACAGCAGGCAGAAGGGTTGGTGAAAGCACA GCAAGATATGGGAGAGACAATGGGAGAACTAGGGTTGGCGTTTATTAAGTTGACAAAGTTTGAGAATGAAGAGGCTGTGTTCAATTCGCAGAGAGTGAGG GCTGCTGACATGAAAAATGTCGCGACTGCTGCTGTCAAAGCAAGTAGATTCTACCGGGAATTAAATGCACAGACTGTCAAGCATTTGGATACCCTCCATG AATACCTTGGGCTGATGCTATCTGTCCATGGTGCATTCTCTGACCGTTCTAGTGCTTTATTGACAGTGCAAACTCTTCTATCAGAATTGTCCTCATTGCA TTCTAGGGCTGAAAAACTAGAAGCTGCATCATCAAAAATATTTGGTGGTGACAAGTCAAGGATTCGCAAGATAGATGAGCTAAAAGAAACTATAAGAGCC ACCGAGGATGCTAAACATGTTGCTACCAGAGAATATGAGCGGATCAAGGAAAATAACAGGAGTGAACTAGAGAGGCTTGACAAAGAAAGGCATGCTGACT TCCTGAACATGTTGAAGGGATTTGTACTTAATCAGGTGGGATATGCTGAGAAAATTGCCAATGTGTGGGCAAAGGTCACAGAGGAGACAAGTGTTTATGT GAAGGAGAGTTCTTGA
AA sequence Show only first row Show all	>Potri.019G124200.1 pacid=42774484 polypeptide=Potri.019G124200.1.p locus=Potri.019G124200 ID=Potri.019G124200.1.v4.1 annot-version=v4.1 MMGSDNNQSFQDDKEEMESLTLDDPLSSTTNSNYMSFADYRSATSSLSATHQLNHPFSPTDSDPLLSPPPPPYSATESGSYIEPPAYADVVFSPFDETSV NEINGVDRNHSLNRSSSSDSSQSFSISRSLSTASNSSSDFMKITVSNPQKEQEAANSLVPGGNTYVTYLITTRTNLPDFDRTEFSVRRRFRDVVTLSDRL AESYRGFFIPPRPDKNVVESQVMQKQEFVEQRRIALEKYLRRLVAHPVIKKSDELKVFLSVQGRLPLATSTDVASRMLDGAVNLPKQLFGESVAVAPSEV VQPAKGGRDLLRIFKELKQSVANDWGGVKPAVVEEDKEFLENKERMQDLEQQLSNASQQAEGLVKAQQDMGETMGELGLAFIKLTKFENEEAVFNSQRVR AADMKNVATAAVKASRFYRELNAQTVKHLDTLHEYLGLMLSVHGAFSDRSSALLTVQTLLSELSSLHSRAEKLEAASSKIFGGDKSRIRKIDELKETIRA TEDAKHVATREYERIKENNRSELERLDKERHADFLNMLKGFVLNQVGYAEKIANVWAKVTEETSVYVKESS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07120		SNX2b	sorting nexin 2B (.1)		Potri.019G124200 [exp]	0	1
AT5G11680			unknown protein		Potri.001G072600 [exp]	1.00	0.8065
AT2G17030			F-box family protein with a do...		Potri.009G140000 [exp]	9.48	0.7395
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.010G142400 [exp]	11.22	0.7320
AT2G26140		FTSH4	FTSH protease 4 (.1)		Potri.006G227700 [exp]	14.07	0.7677	Pt-FTSH4.1
AT3G51940			unknown protein		Potri.001G021100 [exp]	17.60	0.6897
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.015G038100 [exp]	17.94	0.7756
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Potri.012G017600 [exp]	19.28	0.7356	BIP.3
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.018G020700 [exp]	21.00	0.7302
AT3G12050			Aha1 domain-containing protein...		Potri.006G194400 [exp]	24.71	0.7052
AT2G04520			Nucleic acid-binding, OB-fold-...		Potri.014G093801 [exp]	26.15	0.7648

Compare expression of checked genes

Potri.019G124200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.