Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16030 197 / 2e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26730 119 / 4e-33 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24480 82 / 1e-18 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 73 / 2e-15 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G01710 61 / 1e-10 methyltransferases (.1) AT3G53400 49 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152100 [exp] 350 / 8e-124 AT2G16030 225 / 1e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G052100 [exp] 86 / 4e-20 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 77 / 1e-16 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G128100 [exp] 47 / 5e-06 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 42 / 0.0001 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G105100 [exp] 41 / 0.0004 AT5G01710 720 / 0.0 methyltransferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018506 [exp] 235 / 4e-78 AT2G16030 269 / 9e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039718 [exp] 233 / 2e-77 AT2G16030 267 / 7e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036941 [exp] 86 / 1e-19 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 85 / 1e-19 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 73 / 4e-15 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 68 / 6e-13 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10001267 [exp] 54 / 3e-08 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10012217 [exp] 54 / 3e-08 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10014232 [exp] 53 / 7e-08 AT5G01710 697 / 0.0 methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.019G125300.1 pacid=42774688 polypeptide=Potri.019G125300.1.p locus=Potri.019G125300 ID=Potri.019G125300.1.v4.1 annot-version=v4.1 ATGGAGAAACACATTGAAAAATTCTTAAACAAAGTCTCATTGGTTTTCATAACCATAGCCACAATCACCCTTCTCTACCTTTCCCTTCAAACTCCACAAA CTTGTATCCCACCAAACACACCCACCACAAAACCCCACCTCAAATTCCCTTCTTCTACATGCGACCCTTCTCTAAACCACCCTTACATGGATCCTACCAA GAAAAGATTGAAACTTTGGTCTTCAAAATCTTGGCTTTCTCAGGTCTCTTCTTTCACAACTTTCTTCCAAAGTCTGAATCTTTTGAACAATGAAACCAAA GTACTCTGTGTTTCAGCAGGTGCTGGACATGAAGTGATGGCGCTGAATAACATGGGTGTTAGTGATGTTACTGGTGTTGAGATAGTGGATTCTTTGCCAT TAGTTAAAAGGGCTGACCCTAATAACTTGCCCTTTTTTGATGGGGTTTTTGATTTGGCTTTTAGTGCTCATTTAGAAGAGGCTTTGTTTCCTTTGAGGTT TGCTGGGGAGATGGAGAGGACTGTGAGGAATGGTGGGGTTTGTGTGGTTGTTGTAGAGGAATGTGGTGGAGTGGAGGTGGATGCAATTGTTGGATTGTTT AGGAAGTCTATGTTTGTTGGGGCTGAGAATGTTACATTGATTGGGATGAGGATGACCAGGATTATTACGAGAGTTGGTGTTTCTTCTTCTTCATGA
AA sequence Show only first row Show all	>Potri.019G125300.1 pacid=42774688 polypeptide=Potri.019G125300.1.p locus=Potri.019G125300 ID=Potri.019G125300.1.v4.1 annot-version=v4.1 MEKHIEKFLNKVSLVFITIATITLLYLSLQTPQTCIPPNTPTTKPHLKFPSSTCDPSLNHPYMDPTKKRLKLWSSKSWLSQVSSFTTFFQSLNLLNNETK VLCVSAGAGHEVMALNNMGVSDVTGVEIVDSLPLVKRADPNNLPFFDGVFDLAFSAHLEEALFPLRFAGEMERTVRNGGVCVVVVEECGGVEVDAIVGLF RKSMFVGAENVTLIGMRMTRIITRVGVSSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.019G125300 [exp]	0	1
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Potri.015G141400 [exp]	5.74	0.6802
					Potri.002G248000 [exp]	7.34	0.6383
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.008G125800 [exp]	8.12	0.5863
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	9.32	0.6244
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.008G161500 [exp]	21.90	0.5354
AT5G58610			PHD finger transcription facto...		Potri.002G118600 [exp]	24.39	0.6031
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.003G133600 [exp]	24.79	0.5809
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.005G137600 [exp]	29.88	0.5455
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.006G077600 [exp]	35.24	0.5721	MBD902
AT1G53200			unknown protein		Potri.012G106300 [exp]	37.49	0.5777

Compare expression of checked genes

Potri.019G125300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.