Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58410 1781 / 0 HEAT/U-box domain-containing protein (.1) AT1G67856 48 / 7e-06 RING/U-box superfamily protein (.1) AT1G24580 43 / 0.0002 RING/U-box superfamily protein (.1) AT5G41400 44 / 0.0004 RING/U-box superfamily protein (.1) AT4G12190 40 / 0.0007 RING/U-box superfamily protein (.1) AT5G05530 43 / 0.0008 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139300 [exp] 49 / 4e-05 AT2G20650 867 / 0.0 RING/U-box superfamily protein (.1.2) Potri.017G012600 [exp] 45 / 0.0005 AT2G20650 893 / 0.0 RING/U-box superfamily protein (.1.2) Potri.003G184800 [exp] 43 / 0.0006 AT2G37580 120 / 6e-34 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 44 / 0.0008 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1) Potri.005G109600 [exp] 42 / 0.0008 AT3G51325 62 / 3e-13 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026420 [exp] 2096 / 0 AT5G58410 1728 / 0.0 HEAT/U-box domain-containing protein (.1) Lus10042236 [exp] 2043 / 0 AT5G58410 1695 / 0.0 HEAT/U-box domain-containing protein (.1) Lus10006493 [exp] 46 / 0.0002 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10030120 [exp] 45 / 0.0002 AT2G15580 139 / 2e-41 RING/U-box superfamily protein (.1.2) Lus10024629 [exp] 44 / 0.0002 AT5G05530 54 / 2e-09 RING/U-box superfamily protein (.1) Lus10027736 [exp] 44 / 0.0003 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10037490 [exp] 45 / 0.0006 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10042190 [exp] 45 / 0.001 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.019G126000.2 pacid=42774364 polypeptide=Potri.019G126000.2.p locus=Potri.019G126000 ID=Potri.019G126000.2.v4.1 annot-version=v4.1 ATGGGCAGACAGAAAGGAGAAGCAGCTGCTAACAGAAGCAAGTCTCGCGCTTCCAGTAGCAGTCTTGCGGCGTCTCTAGTGCCGTCGGGTCCGGCGGCGG TAACGGTGGGGTTCGGTGGTTATATTGGTAGCTCTCGTTTTGATACAGATGATACTACCGCCTTTTTGGATATAGATGGCGAAGTGGCACAACATGTAAA GCGATTAGGAAGGAAGGATCCTACTACAAAGCTTAAAGCTTTGCAAACTCTATCTGCTCTGTTCAAGGAAAAGTCTGGAAAGGAAATAGTTCTGATTATT CCACAATGGGGTTATGAATACAAGAAGCTGTTGTTGGACTATAATAGAGAAGTTCGACGAGCCACAAATGAGACCATGACAAATCTTGTTACAGCAGTTG GAAGAGATTTAGCTCCGTATCTGAAGTCTTTGATGGGACCGTGGTGGTTTTCTCAATTTGATACAGTTCCTGAAGTTTCTTTAGCTGCCAAAAGATCATT GGAGGCAGCCTTCCCAGCTCAGGAAAAGAGATTAGATGCCTTAATTCTATGCACATCTGAGATATTTATGTATTTGGAAGAAAACCTGAATCACACACCA CAAAGTATGTCATCAGATAAAGTAACTGCTTTGGATGAATTAGAAGAGATGTACCAGCAGGTGATATCTTCGTCATTACTGGCATTGGCCACTCTTCTTG ATGTTTTGGTCTGTATGCAATCTGAGAGACCTGGTTTTGAGAACATATCCTCAGAACCAAAACATGCTTCAAAGGCTAGGGAAACTGCTATTTCTTTTGG TGAAAAGTTGTTTTCTACTCAGAACTATTTTCTTGACTTTCTGAAGTCCAAAACCCCTGCAATCCGGTCAGCGACATATTCTGCATTAAAGAGTTTCATT AAAAATATTCCTGATGCTTTTAATGAAGGAAATATGAAAACTCTTGCAGCTGCAATACTTGGTGCTTTTCAGGAAAAGGATCCTACTTGTCATTCATCAA TGTGGGATGCAATATTATTATTTTCAAAAAGATTTCCTGACAGCTGGACTTCGTTCAATGTTCAGAAAACTGCAATAAACCGGTTGTGGCATTTTCTTAG AAATGGGTGCTTTGGATCTCAGCAGGTCTCTTATCCTGCTCTAGTTATATTGCTAGACATTCTGCCTCCAAAAGCAATCTCTGGAGAAAAGTTTTTTATT GATTTTTTCCAAAACCTATGGGATGGAAGGAACCCATCCAATGCAACAAATCCGGATCGTCTAGCATTTTTTCGTGCACTTAAAGAATGTTTTCTATGGG GGCTATGTAATGCATCTAGGATTTGTGATGATTCAGATTCCACACATCATTTTCAAGTCAGTCTTGTGGACAATATTCTTGTGAAACTTCTGTGGCAAGA ATACCTATTTTCTGTCAGATTGAAGAATCAGGACGGAGTAACCTCTGGAGCACCTGGGAATTCTTTGGAGCATGGAAATTTACCTTTTCACCATAAGTCA GTAGAACCACTGAAGATCAAGTATTCTAGGAGTTATTTTCAAGAGTTGGGAAAATGTATTGTGGAAATTCTATCTGGCGTTTATTTACTGGAGCATGATC TGCTTTCTACTTTCTCTGTGGTATTTAAGGAAAACTGCCTCCGGATGTTTCAGCCAATGGGAAACACAGAAAGTACTACTGAGAATGTAGAACAGGTCAT TAAGTTCTTGTCACTGCTGGAAAAACATTCTGTGCGAAAAGGTGAAAGTTGGCCCTTGGTTTATGTAGTGGGACCAATGTTGGCGAAGTCTTTCCCGTTG ATAAGATCTCATGACACACCAGATGGTGTGAGACTTTTATCAGTTGCAGTTTCATTATTTGGCCCGCAGAAGATAGTCCAAGAACTTTGCATCTCCAATG AAGCGAATTCCTCCTATTATGTACCTGCCCACAAAGACAAAGAATTGGGACCAGAGCTTTTCATGCAAGTTTTTGAAGGAACATTTGTTCCTTGGTGTTT GCTTGAATATAATTCCTCCCCCAATGCTCGACTTGATCTATTGCTTGCATTGCTCAATGATGAATATTTCTCTGAGCAATGGCAGATGATCCTTTCATAT GCAATTAATCAAGAAAAATCCGAATCTGAGCCTGGGCCACAGGAAGTTCATTACTTAGATCTGTTGGCAATGCTTTTAGAAAAAGCGAGAACTGAAATTG CAAGGAGGAAGATGAATAATGATTTCATTCACCAGTTCTGGTTCACACCAGACAAGTGGCAGCATGAGCTTCTGGAATCAGCTGCAGTTGCTGTTGCCTG TTCACCTTCTCCCCATATGACTTCTTCTGCTCGCTTTTTGTGTGCGGTCCTTGGTGGCTCAAGCAAAGACAATTGTATCTCGTTCGCCTCCAAAAATGCA ATGGTTCTGATATTTACGATAGTTTTCAAAAAGTTGGTTGCTTTTGGTCTTGAGTCCTCTTTCAGTGTAGTGAGAGATTCATGTGCTTTATTAGTTGCTG GATCAACCAATTTCGCAGTGGAAAATGAAAGTTCCATAAACAAAACTGAGACAGCTCAGTTTGCTCTGAAAGTACTTGGTGGCAGCTTCTTTTGCCTAAA GACAGTCAGCAATGAAATTGAGCTGGTTTCAGGTATTTTGACTTTGGTATTTATCATAGGCTGGGAGAATAGCTTGGATACATTGGAAGAAGATGTCCTT AATGATGATTCAAAGGAAAAAATCAAGGGTAGGTTGAGATTTGGTGAATCTTTGAATGGTTTCTGTTCCAAGATGAATGATGAATTTTGGAAAAGCCTCG GCATTGACAATAGAAAGAGATTGGGGAGTAATTTGGTTCGCTTTATTAGGTCTGTCATATTTAAGGAAGATAAACTTGGTGCGGATAAGATAACCACTCT GTGCTTTTCTTGGGTTCTTGAAGTTCTTGAATGTCTCTGCCATGACCATGATGAGGAACAAAATCTGTTAGACCAGCTTCTTAGCAAGAATGATACTTGG CCGGTTTGGATAATTCCAGATTTTAGTGCTCCAAAAGGATTGGTCAATTTAAATGCTGGAGCAGTCTCTGTTGATATCTATGCCACTGGGAATCTCAAAT TTGTTTCTTTAGTTGACAAGCTCATCTTGAAAATTGGGATCAATAGAGTTATAACAGGCTATGTTGAAAATACTCTTTCAACCCCCCTGAAGGAAGCAGC TAAAGAAGAGATTACTTCTCGAGCCTGGCTTGCTGCTGAAATATTATGCACATGGAAATGGCCAGGAGGTAGTGCTGTAGCTTCTTTCTTGCCTCTTCTG AGTGCAGGTTGCCGGAGTGGAAATTATCCTTTCCAGGAAAGCCTTTTAGATTCCATCTTCAACATCTTACTTGATGGTGCTCTTGTTCACGGAGAAAGTG GTACACAAAGTTCATTTAATCTATGGCCTGCTTTTGGTGATGAATTGGAAAAGGTTGAAGAACCATTCTTGAGAGCTCTTTTATCTTTATTAGTCAATCT GTTCAAAGAAAATATATGGGAAGGAGACAAAGCTATAAGACTCTTTGACCTACTCATACATAAGCTTTTTATCGGTGAAGCAGTAAACCAAAATTGTTTG AAGATTCTGCCTGTGATTGTTAGTGTTCTTGTCCATCCATTATGTCAGAGAAGCATCGAATCGGAGGAATCTAACGGTGATTCTCAAGTTGCTTCTTTGG GTGAAAAACGGATGCAGGATACTGTTAAAGACTGGCTACGAAGGCTTTTATCCTACCCACCTTTAGTTACATGGCAGGCAGGACAAGATATGGAAGAATG GTTCCAACTGGTTATTGCTTGCTATCCTCTTAGTGCAATGGATGATACAAAATCATTGAAGCTGGTGAGGGAAATAAGTCCTGAGGAGAGAATGCTCATA CTTGATTTATTCAGAAAGCAGAGACATGGTGTTAGTGCATTAGTAGCTTCAAATCAACTACCACTGTTCCGGATGTTGCTATCAAAGTTAATGGTTCTTT CGGTTGGTTATTGCTGGACTGAATTTACTGAAGAAGATTGGGAGTTTTTCTTCTCAAATTTGAGGTCCTGGATTCAGTCAGCGGTTGTGATCATGGAGGA AGTCACGGAAAATGTGAATGATCTTATCACCAACAGCTCTACTTCTGAAAATTTGGATGTTTTTAAGAACCTTGAGAAGATTGTTTTGATCCCGGACTCT TATCCTATAACTGTTGCTATTAATGCCTTGGCATCCTTTTCTTTATTTTGTGCTATTTTGGAACTCCAACAACCTGCTGAGGATAACCCCCTGAGAGCAG AAAGATGGGATTCAACCAGAGATAGAATCCTAGAAGGCATTCTTCGGTTGTTCTTTTGCACAGGCATTGCGGAGTCCATAGCAAGTTCCTACAGTGTTGA AGCTGCATCCATTGTAGCAGCAACTCGGTTTAATAATCCTTACTTCTGGGAGTTGGTGGCCTCAAACGTGGTTAAATCATCGCAACATGCTAGAGACAGA GCAGTGAAATCAGTTGAATTTTGGGGGTTAATCAAAGGGCCGATTAGCTCTTTGTATGCTATCCTGTTCTCCTCTACTCCATTTCCGCCATTGCAGTTTG CTACTTATGTTATTCTCTCAACTGCACCTATTTCACAGTTGGCTATTCTTGAAGAAGACACTGCATGTTCCTTGGATGGCGAGACTAGTGGTGACCGGAA TTCAGGTGCTCTTGAAATGTCATCAGAAAGAAACATACGTTTGAAGGAGGAATTATCTCTTATGATTGAAAAGCTACCTGATGAAGTTTTTGAAGTCGAT TTAATATCACAAGAACGGGTAAATGTGTTCCTTGCTTGGTCTTTATTGCTATCACATTTGTGGTCATTATCATCATCATCATCTGCAAAGGAGCAATTAG TCCAGTATGTGCAAGATTCTGCTAATTCATTGATATTAGATTGCCTTTTCCAGCATATTCCTCTGGAATTGTGTCTGGCACATAATCTTAAGAAGAAAGA CATGGAGCTTCCTGTAGACATTTCAGAGGCTGCTAGTGCAGTAAAAACTGCCATCACAACAGGGTCACTATTGTTTTCCATTGAAACACTGTGGCCTATT GAACCCAAGAAAATGACTTCGCTTGCTGGGGCTTTGTTTGGACTGATGCTTTGCATTCTTCCTGCTTATGTTCGGGGATGGTTTACTGACTTGCGTGACC GCACTGCATCATCTCTTATTGAATCATTTACAAGAACATGGTGTAGTCCTCCTCTTATTGTGAACGAACTGTCTCAGATAAAGAAAGCCAATTTTGCTGA TGAGAATTTTTCAGTCAGTGTGAGCAAATCAGCAAATGAAGTCGTTGCTACATATATGAAGGATGAAACAGGAATGGATCTAGTTATTCGTCTTCCTCCA TCTTATCCATTGCGCCCTGTGGATGTTGAATGTATGCGAAGTCTGGGAATCAGTGAGGTGAAGCAGAGGAAATGGTTGATGTCAATGATGTTGTTTGTTC GCAATCAGAATGGAGCTTTAGCAGAAGCTATACAGACATGGAAAAGCAATTTCGACAAGGAATTTGAAGGTGTCGAGGAGTGCCCAATATGTTATAGTGT CATTCATACGACCAACCACAGCCTTCCTCGGCTTGCTTGCAGAACTTGCAAGCACAAGTTCCATTCGGCTTGCCTCTACAAGTGGTTCTCAACCTCTCAC AAATCATCATGTCCACTGTGCCAGTCTCCATTCTGA
AA sequence Show only first row Show all	>Potri.019G126000.2 pacid=42774364 polypeptide=Potri.019G126000.2.p locus=Potri.019G126000 ID=Potri.019G126000.2.v4.1 annot-version=v4.1 MGRQKGEAAANRSKSRASSSSLAASLVPSGPAAVTVGFGGYIGSSRFDTDDTTAFLDIDGEVAQHVKRLGRKDPTTKLKALQTLSALFKEKSGKEIVLII PQWGYEYKKLLLDYNREVRRATNETMTNLVTAVGRDLAPYLKSLMGPWWFSQFDTVPEVSLAAKRSLEAAFPAQEKRLDALILCTSEIFMYLEENLNHTP QSMSSDKVTALDELEEMYQQVISSSLLALATLLDVLVCMQSERPGFENISSEPKHASKARETAISFGEKLFSTQNYFLDFLKSKTPAIRSATYSALKSFI KNIPDAFNEGNMKTLAAAILGAFQEKDPTCHSSMWDAILLFSKRFPDSWTSFNVQKTAINRLWHFLRNGCFGSQQVSYPALVILLDILPPKAISGEKFFI DFFQNLWDGRNPSNATNPDRLAFFRALKECFLWGLCNASRICDDSDSTHHFQVSLVDNILVKLLWQEYLFSVRLKNQDGVTSGAPGNSLEHGNLPFHHKS VEPLKIKYSRSYFQELGKCIVEILSGVYLLEHDLLSTFSVVFKENCLRMFQPMGNTESTTENVEQVIKFLSLLEKHSVRKGESWPLVYVVGPMLAKSFPL IRSHDTPDGVRLLSVAVSLFGPQKIVQELCISNEANSSYYVPAHKDKELGPELFMQVFEGTFVPWCLLEYNSSPNARLDLLLALLNDEYFSEQWQMILSY AINQEKSESEPGPQEVHYLDLLAMLLEKARTEIARRKMNNDFIHQFWFTPDKWQHELLESAAVAVACSPSPHMTSSARFLCAVLGGSSKDNCISFASKNA MVLIFTIVFKKLVAFGLESSFSVVRDSCALLVAGSTNFAVENESSINKTETAQFALKVLGGSFFCLKTVSNEIELVSGILTLVFIIGWENSLDTLEEDVL NDDSKEKIKGRLRFGESLNGFCSKMNDEFWKSLGIDNRKRLGSNLVRFIRSVIFKEDKLGADKITTLCFSWVLEVLECLCHDHDEEQNLLDQLLSKNDTW PVWIIPDFSAPKGLVNLNAGAVSVDIYATGNLKFVSLVDKLILKIGINRVITGYVENTLSTPLKEAAKEEITSRAWLAAEILCTWKWPGGSAVASFLPLL SAGCRSGNYPFQESLLDSIFNILLDGALVHGESGTQSSFNLWPAFGDELEKVEEPFLRALLSLLVNLFKENIWEGDKAIRLFDLLIHKLFIGEAVNQNCL KILPVIVSVLVHPLCQRSIESEESNGDSQVASLGEKRMQDTVKDWLRRLLSYPPLVTWQAGQDMEEWFQLVIACYPLSAMDDTKSLKLVREISPEERMLI LDLFRKQRHGVSALVASNQLPLFRMLLSKLMVLSVGYCWTEFTEEDWEFFFSNLRSWIQSAVVIMEEVTENVNDLITNSSTSENLDVFKNLEKIVLIPDS YPITVAINALASFSLFCAILELQQPAEDNPLRAERWDSTRDRILEGILRLFFCTGIAESIASSYSVEAASIVAATRFNNPYFWELVASNVVKSSQHARDR AVKSVEFWGLIKGPISSLYAILFSSTPFPPLQFATYVILSTAPISQLAILEEDTACSLDGETSGDRNSGALEMSSERNIRLKEELSLMIEKLPDEVFEVD LISQERVNVFLAWSLLLSHLWSLSSSSSAKEQLVQYVQDSANSLILDCLFQHIPLELCLAHNLKKKDMELPVDISEAASAVKTAITTGSLLFSIETLWPI EPKKMTSLAGALFGLMLCILPAYVRGWFTDLRDRTASSLIESFTRTWCSPPLIVNELSQIKKANFADENFSVSVSKSANEVVATYMKDETGMDLVIRLPP SYPLRPVDVECMRSLGISEVKQRKWLMSMMLFVRNQNGALAEAIQTWKSNFDKEFEGVEECPICYSVIHTTNHSLPRLACRTCKHKFHSACLYKWFSTSH KSSCPLCQSPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	0	1
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	1.41	0.8798
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	4.24	0.8671
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	4.58	0.8655
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	6.32	0.8571	Pt-SPY.1
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	6.32	0.8463
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	6.63	0.8585
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.009G034900 [exp]	6.92	0.8434
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.011G049700 [exp]	8.66	0.8397
AT1G02080			transcription regulators (.1.2...		Potri.002G143000 [exp]	9.48	0.8511
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	10.48	0.8436

Compare expression of checked genes

Potri.019G126000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.