Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07080 373 / 2e-125 HXXXD-type acyl-transferase family protein (.1) AT2G25150 373 / 3e-125 HXXXD-type acyl-transferase family protein (.1) AT2G23510 357 / 4e-119 SDT spermidine disinapoyl acyltransferase (.1) AT3G47170 339 / 6e-112 HXXXD-type acyl-transferase family protein (.1) AT1G28680 278 / 2e-88 HXXXD-type acyl-transferase family protein (.1) AT3G03480 189 / 2e-54 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 180 / 5e-51 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 170 / 1e-47 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 167 / 1e-46 HXXXD-type acyl-transferase family protein (.1) AT5G17540 168 / 2e-46 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G053500 [exp] 262 / 2e-82 AT1G28680 601 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G326300 [exp] 196 / 3e-57 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 183 / 1e-52 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.013G074500 [exp] 184 / 2e-52 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G166600 [exp] 178 / 2e-50 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.013G074400 [exp] 178 / 3e-50 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G113600 [exp] 176 / 6e-50 AT3G62160 526 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.017G068500 [exp] 175 / 8e-50 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.019G043600 [exp] 175 / 3e-49 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015303 [exp] 218 / 2e-65 AT1G28680 412 / 3e-141 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 188 / 7e-54 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 181 / 2e-51 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10035190 [exp] 180 / 5e-51 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10005659 [exp] 179 / 9e-51 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 175 / 2e-49 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 173 / 1e-48 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10020330 [exp] 172 / 3e-48 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10032554 [exp] 171 / 9e-48 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10005660 [exp] 171 / 2e-47 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.019G126400.1 pacid=42774710 polypeptide=Potri.019G126400.1.p locus=Potri.019G126400 ID=Potri.019G126400.1.v4.1 annot-version=v4.1 ATGGAAACCCACCATCGTGCACCTCTTTTGCTTGATAGAAAAGATGTTGTGCTTGTTAAACCAGCAAAACCAACTCCTTCAAAGACCCTTTCTTTCTCTA CTATCGACAACGATCCCAACCTTGAATTTGTGTGTCATAGTGTTTATGTTTACAAAGCAAATTCTGTTTCTTCTGATAATGGCAGTACTGCTGACCATGA TCTTGCATCAAAACTTAATGGCCAAGCAGACCCTGCTCGTGTAATTAAAGATGCAATATCTAAAGTTTTGGTTCATTACTATCCTCTAGCTGGAAAGCTG AAGAGGGATGGTAGTGATGGAAAACTTTATATCAACTGCAATGGTGAAGGTGTGCCATTCTTAGAGGCAACAGCAAATTGCAAGCTTGCTTCTCTTAAAT ACCTAGATGGGATTGATGTTGAAACTGCCGAAGAATTTGTCTTTGATTTTCCATCAAAGAGTGACTTTGGTTACCACCCTCTGATGTTTCAGGTGACCAA ATTTCCATGTGGGGGTTTCACAATAGGAATGGGCTTATCACACTCAGTTTGTGATGGGTTTGGTGCATCACAATTGTTTAGAGCCATGGCTGAACTTGCT AGTGGTAAAAGTGAGCCCTTAGTGAAACCTGTGTGGGAGAGGGAGAGACTGGTAGCGAAGTCTACTCAGGGACCTCTCCAATCTCCTGTGGACAAGAATT CTCTGGCATCTTCACCGTATTTGATAACAAATGACATTCTGCATGAATGTTTTTTTGTGAAAGCTGAGACTATAAAAAGACTCAAAATGAGTCTCATGAA GGAGTGTGGAGATCATGAAGAGATGAAAGGAAGTTTCACTACTATCGAAGTTCTCGGTGCTTATATCTGGAGATCAAGATTTAGAGCCTTCAAATTAAAC CCAGATGGAAACACCTTGTTCTGTCTAGCTATGGGGATAAGGCACCTTTTGAATCCACCATTGCCGAGTGGATACTATGGAAATGCTTTTGTGGGCTCAA ATCTGGTCATGACGGGGAAGGACCTCGACGAAGGACCATTATCTAGGGTTGCCAAGCTCATCAAAGAGAGCAAGAAACATGCTTCCAATGCTCACTACAT TTGGAGCCAAATAAGCATGTTGGACAAGGTCAGGGAGCTGAACTTCAAGATTGATTCAGATAACGGTGCATCCATGGTTTTGACTGATTGGAGACAATTA GGTCTCCTCGAGGAACTAGATTTTGGATGGAAAGGCTTAGCGAACATGATACCAGTGCCATTGAAGATGTTTGGTTTTGTCTATTTGTGTATTTTCTTGC CTCCTTGCAATTTGGATCCTTCAACAAAAGGTGGGGTTAGAGTGCTTGTTTCTCTCCCAAGAGCTGTCATGCCCAAGTTCAAGGAAGAGATGCATGCTCT CTCTCATCTCGGTACTGATGATGATGATATTATAGTTCCAATGCTTGAACCTGCCATATTAATTTGA
AA sequence Show only first row Show all	>Potri.019G126400.1 pacid=42774710 polypeptide=Potri.019G126400.1.p locus=Potri.019G126400 ID=Potri.019G126400.1.v4.1 annot-version=v4.1 METHHRAPLLLDRKDVVLVKPAKPTPSKTLSFSTIDNDPNLEFVCHSVYVYKANSVSSDNGSTADHDLASKLNGQADPARVIKDAISKVLVHYYPLAGKL KRDGSDGKLYINCNGEGVPFLEATANCKLASLKYLDGIDVETAEEFVFDFPSKSDFGYHPLMFQVTKFPCGGFTIGMGLSHSVCDGFGASQLFRAMAELA SGKSEPLVKPVWERERLVAKSTQGPLQSPVDKNSLASSPYLITNDILHECFFVKAETIKRLKMSLMKECGDHEEMKGSFTTIEVLGAYIWRSRFRAFKLN PDGNTLFCLAMGIRHLLNPPLPSGYYGNAFVGSNLVMTGKDLDEGPLSRVAKLIKESKKHASNAHYIWSQISMLDKVRELNFKIDSDNGASMVLTDWRQL GLLEELDFGWKGLANMIPVPLKMFGFVYLCIFLPPCNLDPSTKGGVRVLVSLPRAVMPKFKEEMHALSHLGTDDDDIIVPMLEPAILI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07080			HXXXD-type acyl-transferase fa...		Potri.019G126400 [exp]	0	1
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	3.46	0.7784
AT1G71080			RNA polymerase II transcriptio...		Potri.008G127900 [exp]	4.00	0.7344
AT2G30270			Protein of unknown function (D...		Potri.019G126300 [exp]	4.47	0.7755
AT4G22790			MATE efflux family protein (.1...		Potri.001G115400 [exp]	5.47	0.7867
AT2G01910		ATMAP65-6	Microtubule associated protein...		Potri.008G139700 [exp]	9.59	0.7851
AT5G12950			Putative glycosyl hydrolase of...		Potri.001G018200 [exp]	14.83	0.7773
AT5G01750			Protein of unknown function (D...		Potri.016G130500 [exp]	17.86	0.7182
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.018G083700 [exp]	23.74	0.7099
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G003100 [exp]	27.22	0.6848
AT5G20260			Exostosin family protein (.1)		Potri.018G124945 [exp]	27.92	0.7231

Compare expression of checked genes

Potri.019G126400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.