Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40435 144 / 1e-44 unknown protein AT3G56220 135 / 3e-41 bHLH transcription regulators (.1) AT1G29270 62 / 8e-13 unknown protein AT2G46510 42 / 0.0001 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154100 [exp] 278 / 1e-97 AT2G40435 126 / 9e-38 unknown protein Potri.016G132600 [exp] 140 / 2e-43 AT2G40435 155 / 2e-49 unknown protein Potri.006G106900 [exp] 134 / 6e-41 AT2G40435 150 / 4e-47 unknown protein Potri.004G060800 [exp] 77 / 2e-18 AT1G29270 69 / 4e-15 unknown protein Potri.011G070000 [exp] 60 / 9e-12 AT1G29270 75 / 2e-17 unknown protein Potri.018G141700 [exp] 42 / 5e-05 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.005G095250 [exp] 40 / 0.0002 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025257 [exp] 125 / 6e-37 AT2G40435 134 / 2e-40 unknown protein Lus10017415 [exp] 124 / 7e-37 AT2G40435 146 / 3e-45 unknown protein Lus10009089 [exp] 123 / 7e-36 AT2G40435 129 / 2e-38 unknown protein Lus10010217 [exp] 118 / 2e-34 AT2G40435 152 / 1e-47 unknown protein Lus10029251 [exp] 84 / 8e-21 AT2G40435 91 / 5e-24 unknown protein Lus10007304 [exp] 77 / 3e-18 AT1G29270 97 / 4e-26 unknown protein Lus10042572 [exp] 38 / 0.001 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G126800.1 pacid=42773364 polypeptide=Potri.019G126800.1.p locus=Potri.019G126800 ID=Potri.019G126800.1.v4.1 annot-version=v4.1 ATGTTTTCTAGGGAGCAAGAAAGAGAAGCCATGTTTAAGAAGCTTCAACTTCTTCGTTCCATCACCAACTCTCATGCGCACGACAAAGCCTCTGTCATAT TAGATGCATCAAAGTACATAAAAGACTTGAAGCAAAGGGTAGAAAGATTGAATCAAGACATTGCTACAGCTGCAAGCTTTACTGGCGAGAATTTTCCTAC GATTAGAGTAGAAGAACAAGAGGATGATTTTCTGATTAAGGTATTCACCACAAGGAATTGCCAGGGATTACTTGTATTCATACTGGAAGCTTTTGAAGAG CTCAGCCTTGAGGTTCTCCAAGCTAGGGTTTCTACTTCAGACAGTTTCATTTTAGAAGCTATTGCTACAAGAGAGAATAAAGAAGCTGGTGACCATATCG ATGCTCAAGTGGTTGAACAAGTAGTATTGCAAGGGATACAAAAATGGATTGAAGTTAGTGAGCAAGAATGA
AA sequence Show only first row Show all	>Potri.019G126800.1 pacid=42773364 polypeptide=Potri.019G126800.1.p locus=Potri.019G126800 ID=Potri.019G126800.1.v4.1 annot-version=v4.1 MFSREQEREAMFKKLQLLRSITNSHAHDKASVILDASKYIKDLKQRVERLNQDIATAASFTGENFPTIRVEEQEDDFLIKVFTTRNCQGLLVFILEAFEE LSLEVLQARVSTSDSFILEAIATRENKEAGDHIDAQVVEQVVLQGIQKWIEVSEQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40435			unknown protein		Potri.019G126800 [exp]	0	1
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Potri.009G148900 [exp]	1.41	0.9273	Pt-PSK6.1
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G227600 [exp]	5.09	0.8998
					Potri.003G178500 [exp]	6.92	0.8550
AT1G71140			MATE efflux family protein (.1...		Potri.004G093400 [exp]	9.64	0.8798
AT3G50150			Plant protein of unknown funct...		Potri.013G146700 [exp]	10.19	0.8726
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G140501 [exp]	10.58	0.8503
AT5G45540			Protein of unknown function (D...		Potri.006G010900 [exp]	10.72	0.8702
AT4G31980			unknown protein		Potri.013G146600 [exp]	20.19	0.8666
					Potri.012G018900 [exp]	23.08	0.8548
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	23.87	0.8103

Compare expression of checked genes

Potri.019G126800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.