Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06950 1278 / 0 ATTIC110, TIC110 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154300 [exp] 1660 / 0 AT1G06950 1258 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042231 [exp] 973 / 0 AT1G06950 927 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Lus10008580 [exp] 747 / 0 AT1G06950 735 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Lus10026424 [exp] 345 / 3e-110 AT1G06950 377 / 7e-123 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Lus10042232 [exp] 91 / 8e-21 AT1G06950 142 / 1e-39 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16940 [poplar] [flax] Tic110 Chloroplast envelope transporter
Representative CDS sequence Show only first row Show all	>Potri.019G127000.2 pacid=42774499 polypeptide=Potri.019G127000.2.p locus=Potri.019G127000 ID=Potri.019G127000.2.v4.1 annot-version=v4.1 ATGAACCCTTCTCTCCTCGCTTCTTCACCTTCCACTCCTTTCCTCTCCCCAATCCCTCTCAAGCTCACTCCTTCCTCTCTAACCCTCCCTAAACGCCACC GTTTTCTCGTCTCCTTCCCCCGCAGCTCCGCCGCCGAAACCCCCTCCACCGTCACCTTAGAATCAAAACCCGATAATGTTTTTGGAGGAAAGAGAGAGCT AACAGGTATTCAACCTATAGTGAGTAATCTCTCGCCGACGCTAAGATTGGCGAGCTCGGCGATAATCCTAGCTGGAGCTTTAGCTGCTGGGTATGGTTTA GGGACTAAGTTCGGTGGCGGGTCTCGGAATTTGGCACTTGGCGGTGCTGCTGTGGCCGGGGCAGCTGGTGGGGCGGTTGTTTATGCATTGAATTCGGCTG TTCCGGAGGTTGCGGCGATAAATTTGCACAATTATGTTTCTGGGTTTGATGATCCCATTCAAGTTAGTAAAGAGGAGATTGAAGGCATTGCTAAAAAATA TGGTGTGAGCAAGCAAGATGAGGCATTTAATGCGGAGCTTTGTGATTTATACAGTCGGTTTGTGTCCTCTGTCCTTCCTCCTGGGGGTGAAGAGCTTAAA GGGAATGAAGTTGAAACAATCATTAATTTTAAAAATGCTTTGGGCATTGACGACCCAGATGCTGCTAGCATGCATGTGGAGCTTGGGAGGCGGATTTTCA GGCAAAGGCTTGAAACCGGGGATCGTGATGGAGATGTAGAGCAGCGTCGGGCATTTCAGAAATTGATATATGTTTCAACTCTTGTTTTTGGAGAAGCATC GTCTTTTCTTTTACCTTGGAAACGTGTTTTCAAGGTCACCGATTCTCAGGTTGAAATTGCTATTCGTGATAATGCCCAGAGGTTGTATTCTTCAAAGCTA AAATCAGTTGGAAAAGATATTGATGTGGAACAGCTTGTTAGCCTTAGACAAGCACAGATTTCTTGTCGACTTTCAGATGAGCTTGCAGAGGACTTATTTA GGCAGCGCACAAGAAAACTGGCTGAGAAAAATATTTCAGCAGCACTTGATAGACTGAAATCTAGGACAAGAACAGTCCAGGATGTTGTGAAAGTTGTGGA AGAGCTTGATAAGATACTGGCATTCAACAACAAGCTTATTTCATTAAAGAACCATGAGGATGCAGCTTCATTTGCCTGCGGAGTTGGTCCAGTTTCTGTA TCAGGTGGTGAGTATGACAGTGAGAGAAAGATAGATGATTTGAAGCTTCTTTATAGGGCATATGTTACAGATACTTTATCTGGTGGTCGCATGGAAGAAC ATAAGCTTGCTGCATTAAATCAATTGAAGAATATATTTGGCTTAGGTAAAAGGGAGGCAGAATCAATTACGCTTGACATCACTTCAAAGGTATATCGTAA ACGGCTTGCACAGGCTGTTTCAAGTGGTGATTTAGAATTTGCTGATAGCAAAGCAGCCTTCCTACAAAATCTCTGTGAGGAGTTGCACTTTGATCCACAA AAAGCCACTGAGATTCATGAAGAAATTTACAGGCAAAAGCTTCAGCAGTGTGCAGCTGATGGAGAGTTGAGTGACGAGGATGTTAAAGCGCTGACTCGTT TGAGAGTCATGCTCTGTATTCCCCAGCAAACTATCGATGCAGCTCATTCTGATATCTGTGGCAGTTTATTTGAAAGGGTGGTTAAAGATGCAATTGCATC AGGGGTTGATGGCTATGATGCTGATGTTAAGAAGGCTGTAAGAAAGGCTGCTCATGGCTTACGCTTAACACGGGAGGCTGCCATGTCCATTGCTGGCAAA GCGGTTCGAAGGATTTTCTTAAACTTTGTAAAGCAAGCACGGATGGCTGAAAACCGTACTGAGGGTGCTAAAGCACTAAGGAAATTGATTGCCTTCAATT CATTGGTGGTGACTGAACTGGTGGCTGACATAAAAGGGGAATCTTCTGATACCCCACCAGAAGAGCCTAGTAAGGTGGAAGACAAGAAAATTGAAGAGGA TGACGAATGGGATGACGAGGGATGGGAGTCCCTTGAGACACTTAGGAAAATAAGACCGAGTGAGGAGGTTGCTGCAAAGATGGGCAAGCCTGGCCAGGCT GAGATAAATCTTAAAGATGACCTTTCTGAAAGAGAGAGGACTGACCTCTACAAGACATATCTACTTTACTGCCTAACCGGGGAAGTTACCAGAATTCCGT TTGGTGCTCAAATCACCACGAAGAAGGATGATTCAGAATACCTTTTGCTGAATCAGCTTGGTGGAATTTTGGGTTTGACTGTAAAGGAAATTGTGGAAGT CCACAGGAGCCTAGCTGAGCAGGCTTTTAGACAACAAGCTGAGGTCATTTTAGCTGATGGACAATTGACAAAAGCCAGGATAGAGCAGCTCAATGACTTG CAGAAGCAAGTTGGCTTGCCACCCGAGTATGCACAGAAGGTGATAAAGAACATTACAACTACAAAAATGGCAGCTGCTCTTGAAACTGCTATCAATCGAG GGAGGCTCAATATGAAACAGATAAGAGAGCTGAAGGAAGCAAGTATTGACTTCAACAGCATGGTATCTGAAAAGTTGCGAGAAAACCTGTACAAGAAAAC TGTTGATGAAATTTTCTCATCTGGCACTGGGGAGTTTGACGAGGAGGAAGTCTATGAGAAAATCCCAGTAGATCTTAACATTAATGTCGAGAAGGCTAAA GGGGTTGTCCATGAGCTTGCACGGAGTAGACTGTCAAACTCACTGATTCAGGCTGTGGGGCTACTAAGGCAGAGAAATCAACAAGGAGTGGTTTCCACTC TTAATGACTTGCTGGCTTGTGATAAAGCCGTGCCTTCTGAGACATTGACATGGGAGGTGCCTGAGGAGCTAGCTGATTTGTACACCATCTACATGAAAAA TAACCCAGCACCAGAAAAACTGTCCCGTCTGCAGCATCTGCTGGGCATAAGCGATTCAACTGCCACTGCTCTTGGAGAGACGGAAGATAGCATGTTCTCA GTTGGGGCAGAGGAAGAAAAGTTTGTGTTCTAA
AA sequence Show only first row Show all	>Potri.019G127000.2 pacid=42774499 polypeptide=Potri.019G127000.2.p locus=Potri.019G127000 ID=Potri.019G127000.2.v4.1 annot-version=v4.1 MNPSLLASSPSTPFLSPIPLKLTPSSLTLPKRHRFLVSFPRSSAAETPSTVTLESKPDNVFGGKRELTGIQPIVSNLSPTLRLASSAIILAGALAAGYGL GTKFGGGSRNLALGGAAVAGAAGGAVVYALNSAVPEVAAINLHNYVSGFDDPIQVSKEEIEGIAKKYGVSKQDEAFNAELCDLYSRFVSSVLPPGGEELK GNEVETIINFKNALGIDDPDAASMHVELGRRIFRQRLETGDRDGDVEQRRAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAQRLYSSKL KSVGKDIDVEQLVSLRQAQISCRLSDELAEDLFRQRTRKLAEKNISAALDRLKSRTRTVQDVVKVVEELDKILAFNNKLISLKNHEDAASFACGVGPVSV SGGEYDSERKIDDLKLLYRAYVTDTLSGGRMEEHKLAALNQLKNIFGLGKREAESITLDITSKVYRKRLAQAVSSGDLEFADSKAAFLQNLCEELHFDPQ KATEIHEEIYRQKLQQCAADGELSDEDVKALTRLRVMLCIPQQTIDAAHSDICGSLFERVVKDAIASGVDGYDADVKKAVRKAAHGLRLTREAAMSIAGK AVRRIFLNFVKQARMAENRTEGAKALRKLIAFNSLVVTELVADIKGESSDTPPEEPSKVEDKKIEEDDEWDDEGWESLETLRKIRPSEEVAAKMGKPGQA EINLKDDLSERERTDLYKTYLLYCLTGEVTRIPFGAQITTKKDDSEYLLLNQLGGILGLTVKEIVEVHRSLAEQAFRQQAEVILADGQLTKARIEQLNDL QKQVGLPPEYAQKVIKNITTTKMAAALETAINRGRLNMKQIRELKEASIDFNSMVSEKLRENLYKKTVDEIFSSGTGEFDEEEVYEKIPVDLNINVEKAK GVVHELARSRLSNSLIQAVGLLRQRNQQGVVSTLNDLLACDKAVPSETLTWEVPEELADLYTIYMKNNPAPEKLSRLQHLLGISDSTATALGETEDSMFS VGAEEEKFVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	0	1
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	4.00	0.9495
AT4G23940			FtsH extracellular protease fa...		Potri.001G089800 [exp]	4.24	0.9301
AT2G30320			Pseudouridine synthase family ...		Potri.013G154200 [exp]	4.58	0.9367
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.005G220400 [exp]	4.89	0.9562
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	5.00	0.9283
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	6.92	0.9463
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	7.14	0.9309
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.008G017400 [exp]	8.66	0.9400
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Potri.001G359500 [exp]	10.95	0.9329	Pt-FTSZ.1
AT3G16260		TRZ4	tRNAse Z4 (.1)		Potri.001G186900 [exp]	11.74	0.9084

Compare expression of checked genes

Potri.019G127000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.