Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PKS5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30360 531 / 0 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G01820 452 / 1e-157 PKS24, CIPK14, ATSR1, SnRK3.15, ATCIPK14 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) AT4G18700 451 / 3e-156 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 431 / 1e-148 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 429 / 3e-147 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT5G45820 406 / 2e-139 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT2G38490 405 / 6e-139 CIPK22, SnRK3.19 SNF1-RELATED PROTEIN KINASE 3.19, CBL-interacting protein kinase 22 (.1) AT2G34180 405 / 3e-138 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT4G30960 399 / 1e-136 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G30270 383 / 7e-130 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155600 [exp] 709 / 0 AT2G30360 536 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.016G133900 [exp] 506 / 5e-179 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.011G067600 [exp] 443 / 2e-152 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 436 / 4e-150 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G186200 [exp] 406 / 2e-139 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 399 / 9e-137 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 399 / 2e-136 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 395 / 3e-135 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.013G156000 [exp] 395 / 5e-135 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009925 [exp] 560 / 0 AT2G30360 553 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10025245 [exp] 516 / 0 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10009103 [exp] 503 / 1e-177 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10022748 [exp] 479 / 2e-168 AT2G30360 491 / 3e-173 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10015275 [exp] 421 / 5e-144 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10021852 [exp] 403 / 3e-138 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 399 / 2e-136 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10014163 [exp] 394 / 1e-134 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 394 / 1e-134 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007284 [exp] 392 / 4e-134 AT4G18700 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.019G128100.1 pacid=42774301 polypeptide=Potri.019G128100.1.p locus=Potri.019G128100 ID=Potri.019G128100.1.v4.1 annot-version=v4.1 ATGCCAGAGATCGAACAAGTTTCCGAAAATGCCTTATTTGGCAAGTATGACGTTGGAAAGCTTCTTGGATGTGGAGCCTTTGCGAAGGTCTACCATGCAC GAGATGTTCAAACAGGAAAAAGTGTTGCTATAAAGATTATCAACAAGAAGAAGATCTCTAGCCCTAGCTTGATTGCTAACATAAAGCGGGAGATCTCCAT CATGCGAAAGCTAAACCATCCATATATTGTGAAACTCATCGAAGTCTTGGCTTCCAAGACGAAGATTTATTGCGTCATGGAGTATGTTAAAGGTGGAGAA TTGTTTACTAAAATTGCTAAAGGAAGATTTAGCGAAGATCTTAGCAGGAAATACTTCCGACAGTTGATATCAGCGGTCGGTTATTGTCATCTTCGGGGGG TTTTTCACCGGGATTTGAAACCTGAAAACTTGCTTCTTGATGAAAATGGGAACCTGAAGGTTTCAGATTTTGGTCTGAGTGCTGTCAGAGATCAGACCCA ACTTGATGGGCTTTTGCACACGCTTTGTGGAACTCCAGCTTATGTTGCCCCGGAGATTCTTGCAAAGAAAGGTTATGATGGTGCTAAGATTGATGTCTGG TCTTGTGGTGTTATTCTCTTTGTCTTAGCAGCTGGGTATTTGCCCTTCAATGATCCAAACCTGATGGCCATGTATAAAAAGATTTACAAAGGTGAATTCC GATGCCCTAAGTGGATGTCCACCGATTTGAAACGATTCTTGTCTCGGCTTCTTGATACGAATCCGGAGACAAGAATCACCATTGATGAGATCTTGAAGGA TCCTTGGTTCAAGAAAGGGAAGCATAAGGAAATTAACTTCTACGACGAGGAGTTCAACAAGGATGATGGGAGAAAAGACGAGGAATTGGCTTCTACAAGC TTGAATGCCTTCGATATCATATCTTTCTCCTCCGGTTTGAACTTATCAGGGATGTTTGATGATTCATATAACGTGGTTGACGACGGAGAGAGATTTGTCT CGACCGAATCACCGGAGGATTTGGTGAAGAGAGTTGAGGAGTTTGCCAAGGAGGAGAGGTTGAGGGTGAGGAGAAGGAAAGAATGGGGGCTGGAGATGGA AGGGCAAGATGGTAATTTGATGCTGTCGGTCGAGATTCGCAGGTTGACTGATACTTTGTTTGTTGTGGAGGCTAAGAGGAATGGTGGTGATGCTGGATGT TACAAGGAGATTTGGAAGAATAAGCTTAAGCCTGTGATATTTAATGGCTTAATTAGTACTAATAGTGTTGTTAATGATGATTAA
AA sequence Show only first row Show all	>Potri.019G128100.1 pacid=42774301 polypeptide=Potri.019G128100.1.p locus=Potri.019G128100 ID=Potri.019G128100.1.v4.1 annot-version=v4.1 MPEIEQVSENALFGKYDVGKLLGCGAFAKVYHARDVQTGKSVAIKIINKKKISSPSLIANIKREISIMRKLNHPYIVKLIEVLASKTKIYCVMEYVKGGE LFTKIAKGRFSEDLSRKYFRQLISAVGYCHLRGVFHRDLKPENLLLDENGNLKVSDFGLSAVRDQTQLDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVW SCGVILFVLAAGYLPFNDPNLMAMYKKIYKGEFRCPKWMSTDLKRFLSRLLDTNPETRITIDEILKDPWFKKGKHKEINFYDEEFNKDDGRKDEELASTS LNAFDIISFSSGLNLSGMFDDSYNVVDDGERFVSTESPEDLVKRVEEFAKEERLRVRRRKEWGLEMEGQDGNLMLSVEIRRLTDTLFVVEAKRNGGDAGC YKEIWKNKLKPVIFNGLISTNSVVNDD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G128100 [exp]	0	1	PKS5.2
AT5G10695			unknown protein		Potri.018G007300 [exp]	1.00	0.8249
AT1G18300		ATNUDT4	nudix hydrolase homolog 4 (.1)		Potri.015G035000 [exp]	4.47	0.7501
AT1G13360			unknown protein		Potri.015G054300 [exp]	14.62	0.7599
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Potri.015G030400 [exp]	16.43	0.7191
AT4G39100		SHL1	short life, PHD finger family ...		Potri.009G121000 [exp]	17.23	0.7579	SHL1.1
AT5G09630			LisH/CRA/RING-U-box domains-co...		Potri.001G286300 [exp]	17.88	0.7398
AT2G30000			PHF5-like protein (.1)		Potri.001G277700 [exp]	18.33	0.7440
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.002G260900 [exp]	21.63	0.7079
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Potri.001G372100 [exp]	22.27	0.7018
AT3G56830			Protein of unknown function (D...		Potri.002G146000 [exp]	24.37	0.7486

Compare expression of checked genes

Potri.019G128100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.