Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30395 136 / 1e-40 OFP ATOFP17, OFP17 ovate family protein 17 (.1) AT1G06923 110 / 8e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155300 [exp] 278 / 1e-96 AT2G30395 121 / 1e-34 ovate family protein 17 (.1) Potri.018G080001 [exp] 43 / 4e-05 AT1G15260 52 / 3e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009922 [exp] 157 / 3e-49 AT2G30395 141 / 8e-43 ovate family protein 17 (.1) Lus10024191 [exp] 147 / 4e-45 AT2G30395 137 / 2e-41 ovate family protein 17 (.1) Lus10008588 [exp] 134 / 6e-40 AT2G30395 97 / 2e-25 ovate family protein 17 (.1) Lus10023639 [exp] 41 / 0.0001 AT3G24535 72 / 4e-16 unknown protein Lus10034910 [exp] 40 / 0.0003 AT3G16070 72 / 3e-16 unknown protein Lus10035880 [exp] 39 / 0.001 AT1G15260 94 / 4e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G128400.1 pacid=42773063 polypeptide=Potri.019G128400.1.p locus=Potri.019G128400 ID=Potri.019G128400.1.v4.1 annot-version=v4.1 ATGAAAGCATTAGCTGTCTTCAGATCCAAGCTTTTCAGTCCATGCAAGAAACTACTGTTACTCTTCAGATTCAAGCTCAAAAGACCTGTCTTTATAAGAG GTCTTCAACTTCGTCGTCGCAGCAAGAAACCCAGAAAAGCTCCTCAAAAGAATCGAGTTTTTAATTCTTTGCTCTCCGTTTTTCATCCTCTTAGGAAGTC GAGAAAGATGGACAGAGTTTCCGAACTTAGGAGCGTCTCAGAACCGGAGTGTGAAAGAATGCTTTTTCCATCACCTCTTACACCAGCTTATATCAAGGCC AGTTTGGAAAAGAAAAGGCAAACCTTCGGTGATGAAGATGTAGAAGATGCGTGCAGAAGTTTCGAGAACTATTTGGTAGAGATGATGGTTGAAGAGGGGC AAGTGAGGGATTTAATGGACGTGGAAGAGCTATTGTATTGCTGGAAAAACCTGAAGTGTCCCGTCTTCATTGATTTGGTCGGTAGATTCTATGGAGAGCT ATGCAAGGACTTGTTCTCTCCCGATGACGACAACACTGACATAAATAGTCCCAAGTGA
AA sequence Show only first row Show all	>Potri.019G128400.1 pacid=42773063 polypeptide=Potri.019G128400.1.p locus=Potri.019G128400 ID=Potri.019G128400.1.v4.1 annot-version=v4.1 MKALAVFRSKLFSPCKKLLLLFRFKLKRPVFIRGLQLRRRSKKPRKAPQKNRVFNSLLSVFHPLRKSRKMDRVSELRSVSEPECERMLFPSPLTPAYIKA SLEKKRQTFGDEDVEDACRSFENYLVEMMVEEGQVRDLMDVEELLYCWKNLKCPVFIDLVGRFYGELCKDLFSPDDDNTDINSPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Potri.019G128400 [exp]	0	1
AT2G44160		MTHFR2	methylenetetrahydrofolate redu...		Potri.007G147300 [exp]	6.24	0.8443	Pt-MTHFR1.2
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.004G157900 [exp]	12.56	0.8154
AT1G51980			Insulinase (Peptidase family M...		Potri.008G193200 [exp]	14.42	0.7789
AT2G18030			Peptide methionine sulfoxide r...		Potri.007G012900 [exp]	22.02	0.8010	PtrcMsrA5
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.007G061520 [exp]	27.96	0.7750
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.003G136400 [exp]	34.40	0.8129
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Potri.002G224500 [exp]	45.43	0.7395
AT1G43580			Sphingomyelin synthetase famil...		Potri.002G066900 [exp]	46.94	0.7593
AT3G53850			Uncharacterised protein family...		Potri.010G198700 [exp]	49.88	0.7765
AT5G02420			unknown protein		Potri.001G239000 [exp]	56.28	0.7663

Compare expression of checked genes

Potri.019G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.