Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58350 662 / 0 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G51630 583 / 0 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G28080 454 / 8e-155 WNK9 Protein kinase superfamily protein (.1.2) AT3G48260 449 / 1e-152 WNK3 with no lysine (K) kinase 3 (.1) AT3G22420 447 / 6e-151 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G18750 406 / 5e-135 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT3G04910 407 / 7e-134 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT1G49160 401 / 3e-133 WNK7 Protein kinase superfamily protein (.1.2) AT5G41990 371 / 1e-121 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 356 / 3e-116 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155100 [exp] 1040 / 0 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.016G134600 [exp] 671 / 0 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.005G049800 [exp] 480 / 1e-161 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 477 / 2e-160 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 466 / 4e-156 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 462 / 1e-154 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.012G086700 [exp] 456 / 4e-154 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 448 / 3e-151 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.003G145300 [exp] 413 / 2e-137 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008590 [exp] 622 / 0 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10042223 [exp] 618 / 0 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10024192 [exp] 599 / 0 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10009921 [exp] 595 / 0 AT5G58350 545 / 0.0 with no lysine (K) kinase 4 (.1) Lus10014165 [exp] 551 / 0 AT3G51630 609 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10022747 [exp] 541 / 0 AT3G51630 597 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10001789 [exp] 471 / 1e-158 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10020236 [exp] 470 / 2e-158 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10010547 [exp] 469 / 3e-158 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 463 / 7e-156 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.019G128600.2 pacid=42773890 polypeptide=Potri.019G128600.2.p locus=Potri.019G128600 ID=Potri.019G128600.2.v4.1 annot-version=v4.1 ATGTATAGAAAGCAAGTTGAAGTGCGTCCTTTTGATGAAACCGAGGCTGATCATGGCTATGCTGAAACCGATCCTACAGGCCGTTATGGTCGGCTTGAAG AAGTTCTTGGCAGAGGAGCAATGAAAACAGTGTACAAGGCAATAGATGAATTCTTGGGAATAGAGGTGGCATGGAACCAGGCTAAACTCAGTCGGGTGCT TTGCTCACCAGAGGATTTGCAGAGGCTTTACTCAGAAGTTCATCTGCTCAGAATCCTCAATCATGACTCTATCATCAAATTTTACGCCTCTTGGATTGAT GTTCGTGGAAAGACCTTTAACTTCATCACTGAAATGTTTACTTCAGGAACTCTCAGACAATATCGCCAAAAATATACCCGTGTGAACATCCGAGCCATCA AGAAATGGGCTCGACAAATCTTAGAAGGCATCGAGTATCTACATGGCCATGATCCTCCTGTAATTCATCGAGACCTAAAATGTGACAATATCTTTGTCAA TGGCCATCTTGGACAGGTCAAGATTGGTGATCTAGGTCTTGCAGCCATACTCCGGGGTTCCCAATCAGCACACAGTGTCATAGGCACTCCGGAGTTCATG GCACCAGAACTATACGAGGAGAATTACAATGAACTAGTTGATGTCTACTCATTTGGCATGTGTGTATTGGAGATGCTCACAGCCGAATACCCGTATAGTG AATGTACTAATCCAGCACAAATTTACAAGAAAGTAACATCGGGGAAGTTACCAGCAGTATTCTACCGGATTCAGGACTTGGAAGCTCAGAGGTTTATTGG AAAATGCTTAGAAACTGCTTCAAAGAGATTGCCAGCAAAAGAGCTACTGCTTGATCCATTTCTTGCATCTGATGAAGCTGAACTGTCACGGGTTCCAAGG ATCAGAAATCAAAAGTCATTTCTGAATGACAGGGAAATGGAGAAACTCCAACTAAACGATCATCCCCCAAGGACAGACATGATAATCACGGGGAAGCTGA ACCGTGACGATACCATCTTCCTTAAAGTGCAAATTGCTAATGAAGATGGAACTCCTAGGAACATATTTTTTCCTTTCGACATTCTACATGACACACCGAT TGATGTTGCAATGGAGATGGTCAAGGAGCTTGAGATTGGTGACTGGGAACCATTTGAAATTGCTGATATGATTGACGGGGCGATCTCTGATCTAGTGCCA AACTGGAAGAAATGGGACTTACCTCATACTGAACCCCGCCATATATTTGATTACCAAGAAGATGATGGGCATAATCATCCATTCCACTCTTCCTCATATT CATCATCTCATTCATCCCTATCAGGATCAACGCCACATTTGCTCCAAGATGATTTGTTTGATGATACCAGCTCTCAAAGCTCTTCACACTCAGGATCATA TTCTTGCTTGAACTACATCTCTGGCGATGAGCACAAGCTTGATTTAAGCACAACAAGGAGGGAGAAACATCTGGACACGAGGACTCAAAATTCAACAAGA TTCTGTCCTCGAGAAAATTCAAATTCCAATATTGGCCAGGTACTGGCGACAAATGCCTACAACAACTGCAAGGTTTTGCTGGAATCAAAAAGTAGAGTTT CTAGCTCTAAAAGCAAAAGGATGATGGACAGTCGTAGATTAACAAGGAACCGATCACTGGTAGATATTCGCAGCCAGCTACTACACCGATCACTGGTGGA AGAAGTGCACAAGCGACGATTGTCCAAGACAGTAGGAGATGTAGAGGATGTTGGTTTTCAGGCACCTGCCGAGGTTTGCAAAAAGGCGTCACAACGGACT TCGAGCAGAAGACATTAA
AA sequence Show only first row Show all	>Potri.019G128600.2 pacid=42773890 polypeptide=Potri.019G128600.2.p locus=Potri.019G128600 ID=Potri.019G128600.2.v4.1 annot-version=v4.1 MYRKQVEVRPFDETEADHGYAETDPTGRYGRLEEVLGRGAMKTVYKAIDEFLGIEVAWNQAKLSRVLCSPEDLQRLYSEVHLLRILNHDSIIKFYASWID VRGKTFNFITEMFTSGTLRQYRQKYTRVNIRAIKKWARQILEGIEYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQSAHSVIGTPEFM APELYEENYNELVDVYSFGMCVLEMLTAEYPYSECTNPAQIYKKVTSGKLPAVFYRIQDLEAQRFIGKCLETASKRLPAKELLLDPFLASDEAELSRVPR IRNQKSFLNDREMEKLQLNDHPPRTDMIITGKLNRDDTIFLKVQIANEDGTPRNIFFPFDILHDTPIDVAMEMVKELEIGDWEPFEIADMIDGAISDLVP NWKKWDLPHTEPRHIFDYQEDDGHNHPFHSSSYSSSHSSLSGSTPHLLQDDLFDDTSSQSSSHSGSYSCLNYISGDEHKLDLSTTRREKHLDTRTQNSTR FCPRENSNSNIGQVLATNAYNNCKVLLESKSRVSSSKSKRMMDSRRLTRNRSLVDIRSQLLHRSLVEEVHKRRLSKTVGDVEDVGFQAPAEVCKKASQRT SSRRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.019G128600 [exp]	0	1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G072800 [exp]	1.00	0.8825
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.006G192000 [exp]	4.58	0.8062
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.014G024300 [exp]	5.19	0.8290
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.004G029100 [exp]	5.65	0.8364
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.011G044100 [exp]	6.00	0.8121
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017700 [exp]	6.00	0.7995
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.008G183400 [exp]	7.21	0.8241
AT4G30900			DNAse I-like superfamily prote...		Potri.018G106700 [exp]	7.74	0.7782
					Potri.003G105450 [exp]	8.83	0.7819
AT1G35710			Protein kinase family protein ...		Potri.019G129100 [exp]	10.95	0.8178

Compare expression of checked genes

Potri.019G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.