Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G61690 405 / 8e-125 nucleotidyltransferases (.1) AT3G56320 387 / 9e-125 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 329 / 6e-104 Nucleotidyltransferase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154900 [exp] 1266 / 0 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G056800 [exp] 405 / 2e-130 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.015G020400 [exp] 418 / 3e-129 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 414 / 8e-128 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 413 / 1e-127 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 405 / 2e-124 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 69 / 9e-14 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042221 [exp] 494 / 4e-165 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 486 / 2e-161 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 478 / 7e-157 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 478 / 8e-157 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 407 / 5e-133 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 411 / 9e-127 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10004019 [exp] 393 / 1e-123 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1) Lus10030265 [exp] 408 / 5e-123 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10008592 [exp] 373 / 5e-119 AT3G51620 308 / 5e-94 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10034219 [exp] 367 / 8e-117 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G128800.1 pacid=42774610 polypeptide=Potri.019G128800.1.p locus=Potri.019G128800 ID=Potri.019G128800.1.v4.1 annot-version=v4.1 ATGGGTGATCTTCAAGTTTGTGACTTTCCGACTGAAAACGGCCATTTTCACGACCACCATCATCACCAAAATGATCATGATCATCACCATGGTCTTCTGG GTTCGGGTCAAGACCCGGTTTCTCCTTCTTTTTCTTCGAATCCGGATCCTTGGTCAATTGTGGAAGAGAATTGGGAGAGAGCAGAGGAATTTACGAGAGA GATTGTTTATAGAATACACCCAACAGTAGAATCCAATTTCAAGAGGAAACAAATTATTGGTTATGTTCAAAGACTCATTAAATCCTCTCTTGGATTTGAG GTGTTCCCATATGGGTCAGTTCCTTTAAAGACATATCTCCCTGATGGGGATATTGACTTGACTTCCATTAGCAGTCCTGCCATCGAGGAAGCTTTGGTCT CTGATATTCATGCTGTTCTAAGAAGAGAAGAGCTGAATGAGGATTCTACATTTGAAGTGAAGGATGTCCATTGCATTGATGCTGAGGTTAAGCTTATAAA ATGTATTGTACAGAATACAGTGGTGGATATTTCCTTCAATCAATTAGGAGGACTTTGCACCCTATGCTTTCTTGAAGAGGTTGATCGGCTTGTTGGAAAA AATCACCTCTTCAAACGCAGCATTATTTTGATCAAGGCTTGGTGCTACTATGAGAGTCGAATTCTTGGTGCCCATCATGGTTTGATTTCAACGTATGCTT TGGAAACGCTGATTCTGTACATCTTCCATCTATTTCACTGTTCCTTAAATGGGCCTTTGGCGGTTCTCTACAGATTTCTGGAGTACTTCAGCAAGTTTGA CTGGGAGAATTATTGTATTAGTTTAAACGGACCAGTTTGCAAATCTTCCCTTCCCAATATTGTTGCTGAGCCACTTGAAAATGGGCAAGGTGAATTGTTG CTTAGTGATGAATTTCTCAAAGATTGTGCTGATAGGTTCTCTGTCCCATCAAGAAAGCCTGAGATGAATTCACGGCCTTTTCCCCAAAAACATCTTAATA TAGTTGATCCTTTGAAGGAGAATAACAACCTTGGGCGCAGCGTCAACAGAGGTAATTTCTTTCGAATAAGGAGTGCCTTCAAATATGGAGCTCGCAAGCT TGGCCAAATTCTTTTGTTACCCAAAGAGAGAATAGCTGATGAGCTCAAAATATTCTTCGCAAATACTTTGGATAGGCATGGAAGCGACTATTGGACAGAA GTGGGAAATTCTGAATTAGCATCTGGTGCTAGAAGTTCTGATAACTCAGTATCACGGTCATCACATTCCGATACTTGCTCTGAAGATGACATGCATCTGA AATTGAATGGTGGCTATGATAATGATACACTATTTTCTGAAAAATCTAATCATACCCCCCCTTTGCATTTCCCAGGGCTATCTGAAGGAAATAGAGAAAT GCTTATAAATTTTAGTGCTGATGATGAAATGAGCTGCATTTTTAGGCCAGAACCAAAACAGAACCATTTTCAGAATAGTAATTCAGTCTGTTCATGTACC AAGCATGAAGGAATTGCTCCATCTGTTTCAACAACCCCAAATCCTGCTGATGATGTCCCTGAGAACCTATCAACTACTCGAGTAGAAAAAGACTTTGCTG GCATTACTGGAAACTCCCAACCTTTGAAATCCTTGTTGGGACTCAGAGGGGATCACAATGGCCACTTGCAAAGTTTGGCATATAGTCAGTATTGCCATAT GCATGCTGTATCTGCACCTATACCACCCTGTCCTTCCATGTTGCCTCTGTCAGAGAATAAGAATCGTTGGGAAACCGTTCAGCAATCCCTACAATTGAAG CAGAATGGTCATTCTCAAATGAACACGAACCATGTTTTTGGAACACAACTCTATTGTGTTAACCCAGTGGGGCCATTTAGAGCTGCTACTGATTCTGAAG AAAAGAAGAAACGACGTGGAACAGGAACATACATTCCCAACATGAGTTATCACTCAAGTAGGGGGGATAGGCTGTCCTTGGGAAGAGGGAGGACTCAACC ACAAGCAAATCATGGTCAGTTGCATAAATATACCCATGAAAATGGTTTGCCTACAACTTTGCAGGAGAAGAATCTCTCTGAACATGGCCATGATCTTTCA GAGGCTGAATACCCACATCTTGGTAATGGGAAGCCTGTGCCACTAGAGGCCCACCATTCTTACCCTTCTGTATGGGGATCTTCCAATGCCAATGGTTCCT CCCGTGCATTTGTGAGAACTGATTGTGGGTCTCGGGGCCTTCAGCATCCTGAAGGGCCTCCTTCCACGTCAGATTTGGTGGTCCTGTCATGCCCTGGGAC CTCAGCTACAAGCCCTGTCGCATCAACAGCCAAGGACCTCGAGATTTTAGAAAATGAGCAAGAAAGGGCTTTATTGCAGCAATATCATCTTAAAGACAAT GTTCATTTTCCTCCTCTGACTCAATGA
AA sequence Show only first row Show all	>Potri.019G128800.1 pacid=42774610 polypeptide=Potri.019G128800.1.p locus=Potri.019G128800 ID=Potri.019G128800.1.v4.1 annot-version=v4.1 MGDLQVCDFPTENGHFHDHHHHQNDHDHHHGLLGSGQDPVSPSFSSNPDPWSIVEENWERAEEFTREIVYRIHPTVESNFKRKQIIGYVQRLIKSSLGFE VFPYGSVPLKTYLPDGDIDLTSISSPAIEEALVSDIHAVLRREELNEDSTFEVKDVHCIDAEVKLIKCIVQNTVVDISFNQLGGLCTLCFLEEVDRLVGK NHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLILYIFHLFHCSLNGPLAVLYRFLEYFSKFDWENYCISLNGPVCKSSLPNIVAEPLENGQGELL LSDEFLKDCADRFSVPSRKPEMNSRPFPQKHLNIVDPLKENNNLGRSVNRGNFFRIRSAFKYGARKLGQILLLPKERIADELKIFFANTLDRHGSDYWTE VGNSELASGARSSDNSVSRSSHSDTCSEDDMHLKLNGGYDNDTLFSEKSNHTPPLHFPGLSEGNREMLINFSADDEMSCIFRPEPKQNHFQNSNSVCSCT KHEGIAPSVSTTPNPADDVPENLSTTRVEKDFAGITGNSQPLKSLLGLRGDHNGHLQSLAYSQYCHMHAVSAPIPPCPSMLPLSENKNRWETVQQSLQLK QNGHSQMNTNHVFGTQLYCVNPVGPFRAATDSEEKKKRRGTGTYIPNMSYHSSRGDRLSLGRGRTQPQANHGQLHKYTHENGLPTTLQEKNLSEHGHDLS EAEYPHLGNGKPVPLEAHHSYPSVWGSSNANGSSRAFVRTDCGSRGLQHPEGPPSTSDLVVLSCPGTSATSPVASTAKDLEILENEQERALLQQYHLKDN VHFPPLTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.019G128800 [exp]	0	1
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.015G089100 [exp]	10.95	0.6677
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.010G021400 [exp]	11.44	0.7058
AT4G08310			unknown protein		Potri.002G085000 [exp]	22.24	0.6110
AT1G60650		AtRZ-1b	AtRZ-1b, RNA-binding (RRM/RBD/...		Potri.008G033000 [exp]	27.92	0.5954
AT5G46070			Guanylate-binding family prote...		Potri.011G058500 [exp]	28.35	0.6569
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.002G094600 [exp]	33.46	0.6474
AT2G30530			unknown protein		Potri.013G160100 [exp]	34.35	0.6346
AT2G17787			unknown protein		Potri.005G242300 [exp]	34.98	0.5906
AT4G28990			RNA-binding protein-related (....		Potri.006G160500 [exp]	38.41	0.5714
AT3G58110			unknown protein		Potri.013G119700 [exp]	42.98	0.6452

Compare expression of checked genes

Potri.019G128800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.