Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35710 863 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 746 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G63930 590 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 589 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 561 / 2e-180 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 563 / 8e-180 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 556 / 2e-177 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 539 / 1e-171 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 527 / 2e-167 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 517 / 1e-163 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120733 [exp] 1396 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 1396 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G122500 [exp] 1352 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G129300 [exp] 1315 / 0 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129400 [exp] 1281 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060084 [exp] 1253 / 0 AT4G08850 724 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 1230 / 0 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G127200 [exp] 1224 / 0 AT4G08850 617 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G059600 [exp] 1215 / 0 AT4G08850 734 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008712 [exp] 770 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 766 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 765 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10003612 [exp] 757 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 742 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 700 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 668 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 656 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 588 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10036251 [exp] 543 / 3e-172 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G129100.1 pacid=42773087 polypeptide=Potri.019G129100.1.p locus=Potri.019G129100 ID=Potri.019G129100.1.v4.1 annot-version=v4.1 ATGACGTCCCTGCTACACAAACCATTCTTCTCAATCTTTCTCCACGTCCTGTTTTTGCTCCTTCACATGTTCTACTACTCTTCTTTCTTTGTTATTGCTG ATCACACTTCCTCTAAAACTTCAATATTTGGTACGGCTATAAGTGCTGCCAATTCCAAAGTTGCTGGAGGTAATAATACAGAAGCTGAGGCTCTTCTTAA ATGGAAGGCAAGTCTTGACAACCAAAGCCAATCTCTTCTTTCTTCTTGGTTCGGCATCAGCCCTTGCATTAACTGGACTGGAATCACTTGCGACAGTTCT GGAAGCGTCACCAACTTGAGCCTTCCACACTTTGGCTTGAGAGGTACGCTTTATGATCTCAACTTCTCATCCTTCCCCAATCTTTTCTCTCTCAATCTCC AGAGGAATTCAATTCATGGAACCGTTCCATCAGGCATTGATAATCTACCCAAGATTACTGAGCTCAATTTATGTGATAATAATCTCACGGGAAGCATCCC ATCTAAGATAGGCTTAATGAAAAGTCTCAACATCTTGTATCTGTGTGGAAATATTCTTAGTGGCTCCATCCCATGTGAAATTGGAAAGTTGACGTCTCTT TCCCTTCTTTCATTATCTGCAAATAATCTCACTGGTGTGATCCCCTTCTCTATTGGAAACTTGACAAACTTATCCTTGCTTCACCTCTTTCAAAACCAGC TCTCTGGTCCCATCCCTTCTTCTATCGGGAACATGAGCTTTCTCATTGATCTACAACTACAACAAAATAATCTCACTGGTTTTATCCCCTCCTCTGTTGG AAATTTGAGGAGTCTATCGATACTCTATCTTTGGGGTAATAAACTCTCTGGTTCCATTCCTGGAGAAATTGGGTTGCTAGAATCACTCAATGATCTTGAC TTTTCAAGTAATAATTTAACCGGTGCAATCCCTAATTCAATAGGAAACTTAACGAACTTATCATTTTTCCACCTTTTTCAAAATCAACTCTCTGGTCCCA TTCCTACCTCTATTGGGAATATGATTATGCTCATTGATGTAGAGCTCGGACAAAATAATCTCATTGGTTCAATCCCCTCCTCTGTTGGAAATTTGAGGAA CCTATCAATATTCTATCTTTGGCGTAACAAACTCTCTGGTTCCATTCCTAAAGACATTGGATTGCTAGAATCTCTCTATGATCTTGACTTTTCAAGTAAT ATTTTAACCGGTGAAATCCCTAATTCAATTAAAAACTTGACAAATCTATCTTTTCTCTCCCTTTATCAAAACCAACTATCTGGTCCTATACCTTCTTTTA TTGGGAACATGAGCATGCTCGTTGATATAGAACTAGATGAAAACAATCTCAATGGTTTGATCCCCTCCTCTATTGGAAATTTAAAAAACCTATCCTTTCT CTATCTAGGTGAAAATAATTTATATGGATATGTTCCTTCAGAAATAGGAAAGCTTAAATCTCTAGAGAAATTGACCTTCGGTGAGAACAAACTTCGCGGA TCATTGCCCCTAAAGATGAACAATCTTACCCATTTGAAGTTTTTGGATTTGTCTTACAATGAATTCACGGGTCATTTGCCACAAGAGCTATGCCATGGAG AAGTACTTGAAAGATTTATTGCTTGTAACAACTATTTCTCCGGTTCCATCCCGAAAAGCTTGAAAAACTGTACCGGTTTACACCGACTAAGACTTGATAG GAATCAATTGACAGGAAATATTTCTGAGGATTTTGGCATCTATCCACATTTGAATTATGTTGATTTGAGTTACAATAATTTTTATGGCGAGCTTTCTTTG AAATGGGGAGATTATCGTAACATAACGAGCTTGAAAATCTCAAACAATAATGTTTCTGGGGAGATACCAACAGAGCTCGGGAAGGCTACTCAATTACAAT TGATTGATCTGTCCTCAAATCACTTAGAAGGAACCATCCCAAAAGAATTAGGGGGGTTGAAGCTGTTGTACAACCTTACTCTTAGCAACAACCATCTTTC AGGTGCCATTCCCTCAGACATCAAGATGCTTTCTTCCCTCAAAATCCTTGATTTAGCATCTAATAATCTAAGTGGATCGATTCCAAAACAACTTGGGGAG TGCTCAAATTTATTGTTGCTGAACCTCAGTAATAATAAATTTACAAATAGCATTCCACAGGAGATGGGCTTTCTGCGTTCTCTTCAAGATCTTGATCTTA GTTGCAATTTCTTAGCTCAAGAGATACCGTGGCAACTTGGGCAACTGCAAATGTTGGAAACTCTGAATGTCTCTCACAACATGCTTTCTGGATTGATTCC GCGCACTTTCAAAGATCTATTAAGCTTGACAGTTGTGGATATATCATACAATGAGCTACATGGCCCTATTCCCGATACCAAAGCCTTCCACAACGCTTCA TTTGAGGCATTAAGGGATAATATGGGTATATGTGGCAACGCCAGTGGTCTAAAGCCATGCAATCTTCCAAAAAGCAGCAGAACTGTTAAGAGAAAGAGCA ACAAACTTGTTATTTTGATTGTACTCCCTCTTTTAGGAAGCTTACTATTAGTGCTTGTTGTGATTGGAGCTTTATTCATTCTCCGCCAAAGAGCTAGGAA GAGAAAAGCTGAGCCAGGGAATATTGAACAAGATCGAAACTTATTCACGATATTGGGCCATGATGGGAAGTTGTTGTATGAGAATATCATTGCAGCTACC GAGGAATTCAATTCCAACTACTGCATTGGTGAAGGAGGATATGGAACTGTTTATAAAGCAGTGATGCCAGCAGAACAGGTGGTTGCTGTGAAGAAACTTC ACCGGTCACAAACAGACAAGTTGTCCGATTTTAAAGCTTTTGAAACGGAAGTTTGTGTTTTGGCAAATATTCGACATCGAAATATCGTGAAGCTGTATGG ATTTTGCTCACATGCAAAGCACTCTTTTTTGGTTTATGAGTTCATAGAAAGAGGAAGCTTGAGAAAGATCATAACCAGTGAGGAACAAGCAATTGAGCTG GATTGGATGAAAAGGCTAAATGTTGTGAAAGGGATGGCTGGAGCTTTATCCTATCTACACCATTCTTGCTCTCCTCCGATCATTCATCGAGACATTACCA GCAATAATGTCCTTCTGGATTTGGAATATGAGGCACATGTCTCTGACTTTGGCACAGCTAGACTGTTGATGCCTGACTCATCCAATTGGACCTCATTTGC AGGTACTTTTGGATATACTGCTCCAGAGCTAGCTTACACGATGAAAGTGACTGAAAAATGTGATGTCTATAGCTTCGGAGTGGTAACAATGGAAGTGATG ATGGGAAGGCACCCAGGCGATCTCATCTCCACAATCTCATCACAAGCATCTTCCTCATCATCTTCGAAGCCACCGATTTCTCAACAGACATTGTTGAAGG ATGTGCTTGACCAACGCATCTCGCTTCCTAAAAAAGGAGCAGTAGAGGGTGTTGTCCATATCATGAAGATAGCACTTGCATGCTTGCATCCCAATCCGCA ATCCCGACCTACAATGGGAAGAATTTCTTCGGAGCTTGTGACTCAGTGGCCTTCTCTGCCAAAGGAATTTTACACAATCAGTTTGGAAGATCTGTTCTTA CATACAGTTAGTGTGGTCGACTGA
AA sequence Show only first row Show all	>Potri.019G129100.1 pacid=42773087 polypeptide=Potri.019G129100.1.p locus=Potri.019G129100 ID=Potri.019G129100.1.v4.1 annot-version=v4.1 MTSLLHKPFFSIFLHVLFLLLHMFYYSSFFVIADHTSSKTSIFGTAISAANSKVAGGNNTEAEALLKWKASLDNQSQSLLSSWFGISPCINWTGITCDSS GSVTNLSLPHFGLRGTLYDLNFSSFPNLFSLNLQRNSIHGTVPSGIDNLPKITELNLCDNNLTGSIPSKIGLMKSLNILYLCGNILSGSIPCEIGKLTSL SLLSLSANNLTGVIPFSIGNLTNLSLLHLFQNQLSGPIPSSIGNMSFLIDLQLQQNNLTGFIPSSVGNLRSLSILYLWGNKLSGSIPGEIGLLESLNDLD FSSNNLTGAIPNSIGNLTNLSFFHLFQNQLSGPIPTSIGNMIMLIDVELGQNNLIGSIPSSVGNLRNLSIFYLWRNKLSGSIPKDIGLLESLYDLDFSSN ILTGEIPNSIKNLTNLSFLSLYQNQLSGPIPSFIGNMSMLVDIELDENNLNGLIPSSIGNLKNLSFLYLGENNLYGYVPSEIGKLKSLEKLTFGENKLRG SLPLKMNNLTHLKFLDLSYNEFTGHLPQELCHGEVLERFIACNNYFSGSIPKSLKNCTGLHRLRLDRNQLTGNISEDFGIYPHLNYVDLSYNNFYGELSL KWGDYRNITSLKISNNNVSGEIPTELGKATQLQLIDLSSNHLEGTIPKELGGLKLLYNLTLSNNHLSGAIPSDIKMLSSLKILDLASNNLSGSIPKQLGE CSNLLLLNLSNNKFTNSIPQEMGFLRSLQDLDLSCNFLAQEIPWQLGQLQMLETLNVSHNMLSGLIPRTFKDLLSLTVVDISYNELHGPIPDTKAFHNAS FEALRDNMGICGNASGLKPCNLPKSSRTVKRKSNKLVILIVLPLLGSLLLVLVVIGALFILRQRARKRKAEPGNIEQDRNLFTILGHDGKLLYENIIAAT EEFNSNYCIGEGGYGTVYKAVMPAEQVVAVKKLHRSQTDKLSDFKAFETEVCVLANIRHRNIVKLYGFCSHAKHSFLVYEFIERGSLRKIITSEEQAIEL DWMKRLNVVKGMAGALSYLHHSCSPPIIHRDITSNNVLLDLEYEAHVSDFGTARLLMPDSSNWTSFAGTFGYTAPELAYTMKVTEKCDVYSFGVVTMEVM MGRHPGDLISTISSQASSSSSSKPPISQQTLLKDVLDQRISLPKKGAVEGVVHIMKIALACLHPNPQSRPTMGRISSELVTQWPSLPKEFYTISLEDLFL HTVSVVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35710			Protein kinase family protein ...		Potri.019G129100 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.008G183400 [exp]	1.41	0.9066
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.011G168900 [exp]	3.00	0.8849
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.001G279400 [exp]	3.16	0.8409
					Potri.006G265801 [exp]	3.31	0.8405
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017700 [exp]	3.74	0.8362
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.014G024300 [exp]	4.00	0.8668
AT2G41850		ADPG2, PGAZAT	ARABIDOPSIS DEHISCENCE ZONE PO...		Potri.016G054800 [exp]	4.89	0.8573	PG.2
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	6.48	0.8593
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Potri.015G127900 [exp]	6.70	0.8667
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G109000 [exp]	9.27	0.7912

Compare expression of checked genes

Potri.019G129100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.