Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 686 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 625 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 462 / 9e-146 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 459 / 7e-145 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 437 / 3e-136 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 428 / 6e-132 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20270 419 / 1e-130 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 421 / 3e-130 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G34110 412 / 2e-127 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 410 / 5e-127 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G129400 [exp] 1634 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 1320 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G059600 [exp] 1284 / 0 AT4G08850 734 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060168 [exp] 1281 / 0 AT4G08850 735 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060042 [exp] 1276 / 0 AT4G08850 733 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 1254 / 0 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G127200 [exp] 1245 / 0 AT4G08850 617 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G122500 [exp] 1203 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 1192 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008712 [exp] 684 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 673 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 665 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10031161 [exp] 663 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 654 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 643 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 619 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019036 [exp] 605 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 573 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 478 / 2e-153 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G129300.1 pacid=42773456 polypeptide=Potri.019G129300.1.p locus=Potri.019G129300 ID=Potri.019G129300.1.v4.1 annot-version=v4.1 ATGATGTCCTTACTGCACAAACCATTCTTCTCAATCTTTCTCCACGTCCTGATCTTCTTGCTCCTTCACATGTTCTACTTCTCTTCTTTCTTTGTTCTTG CTGATCACACTTCCTCTAAAACTTCGATATTTGGTGCGGCTACTAGTGCTGCCAATTCCAAAGTTGCTGGAGGTAATATTAAAGAAGCTGAGGCTCTTCT CAAATGGAAAGCAAGTCTTGACAACCAAAGCCAATCTCTCCTTTCTTCTTGGGTCGGCACCAGCCCTTGCATTGATTGGATTGGAATCACTTGCGACGGT TCTGGAAGTGTCGCCAATCTGACCTTCCCGCACTTCGGTTTGAGAGGTACGCTTTATGATTTCAACTTCTCATCCTTCCCCAATCTTTCCGTTCTTGACC TTTCGAACAATTCAATTCATGGAACCTTACCATCACATATCGGTAATCTATCCAAGATTACTCAGTTGGGCTTATGTTATAATGATCTCACGGGAAGTAT CCCATCTGAGATAGGCTCCCTGAAAAGTATCACTGATTTAGTTTTATGTAGAAATCTTTTTAGTGGCTCCATTCCACATGAAATTGGAAAGTTGACGTCT CTTTCCCGTCTCTCATTAGCTGTGAATAATCTCACTGGTTCGATTCCTTCCTCTATTGGAAATTTGAAAAACCTATCCAATCTCTTTCTTTGGGATAACA AACTCTCTGGTCGCATTCCTTCAGAAATAGGACAGCTTAAATCTCTGGTGGGATTGAGCTTGGCTAATAACAAACTTCATGGTCCATTGCCCCTAGAGAT GAACAATCTCACCCATTTGAAGCAATTTCATTTGTCTGACAACGAATTCACGGGTCATTTGCCACAAGAGGTATGCCATGGAGGAGTATTGGAAAATCTT ACCGTTGCCAACAACTATTTCTCCGGTTCCATCCCGAAAAGCTTGAAAAACTGTACCAGTTTACACCGACTAAGACTTGATAGGAATCAATTGACAGGAA ATATTTCTGAGGATTTTGGCATCTATCCACATTTGGATTATGTTGATTTGAGTTACAATAATTTTTATGGTGAGCTTTCATTGAAATGGGGAGATTATCG TAACATAACGAGCTTGAAAATCTCAAACAATAATGTTTCTGGGGAGATACCAGCAGAGCTCGGGAAGGCTACTCAATTACAATTGATTGATTTGTCCTCA AATCACTTAGAAGGAACCATCTCAAAAGAATTAGGGGGGTTGAAGTTGTTGTACAACCTTACTCTTAGCAACAACCATCTTTCAGGTGCCATTCCCTCAG ACATCAAGATGCTTTCTTCCCTCAAAATCCTTGATTTAGCATCTAATAATCTAAGTGGATCGATTCCAAAACAACTTGGGGAGTGCTCAAATTTATTGTT GCTGAACCTCACTGATAATAAATTTACAAATAGCATTCCACAGCAGATAGGCTTTCTGCGTTCTCTTCAAGATCTTGATCTGAGTTGCAATTTCTTAGCT CAAGAGATACCGTGGCAACTTGGGCAACTGCAAATGTTGGAAACTCTGAATGTCTCTCACAACATGCTTTCTGGATTGATTCCGCGCACTTTCAAAGATC TATTAAGCTTGACAGTTGTGGATATATCATCCAATAAGCTACAAGGCCCCATTCCCGATATCAAAGCCTTCCACAACGCTTCATTTGAGGCATTAAGGGA TAATATGGGTATATGTGGCAACGCCAGTGGTCTAAAGCCATGCAATCTTCCAAAAAGCAGCAGAACTGTTAAGAGAAAGAGCAACAAACTTGTTATTTTG ATTGTACTCCCTCTTTTAGGAAGCTTACTCTTAGTGATTGTTGTGATTGGAGCTTTATTCATTCTCCGCCAAAGAGCTAGGAAGAGAAAAGCTGAGCCAG GGAATATTGAACAAGATCGAAACTTATTCACGATATTGGGCCATGATGGGAAGTTGTTGTATGAGAATATAATTGCAGCTACCGAGGAATTCAATTCCAA CTACTGCATTGGCGAAGGAGGATATGGAATTGTTTATAAAGCAGTGATGCCAGAAGAACGGGTGGTTGCTGTGAAGAAACTTCACCGGTCACAAACAGAC AAGTTGTCCGATTTTAAAGCTTTTGAAACGGAAGTTTGTGTTTTGGCAAATATTCGACATCGAAATATTGTGAAGCTGTATGGATTTTGCTCACATGCAA AGCACTCTTTTTTGGTTTATGAGTTCATAGAAAGAGGAAGCTTGAGAAAGATCATAACCACCGAGGAACAAGCAATTGAGCTGGATTGGATGAAAAGGCT AAATGTTGTGAAAGGGATGGCTGGAGCTTTATCCTATCTTCACCATTCTTCCTCTCCTCCGATCATTCATCGAGACATTACCAGCAATAATGTCCTTCTG GATTTGGAATATGAGGCACATGTCTCTGACTTCGGCACAGCTAGAATGTTGATGCCTGACTCATCCAATTGGACCTCATTTGCAGGTACTTTTGGATATA CTGCTCCAGAGCTAGCTTACACGATGAAAGTGACTGAAAAATGTGATGTCTATAGCTTCGGAGTGGTAACAATGGAAGTGATGATGGGAAGGCACCCAGG CGATCTCATCTCCACACTCTCATCACAAGCAACTTCCTCATCATCTTCGATGCCACCGATTTCTCAACAGACATTGTTGAAGGATGTGCTTGACCAACGC ATCTCGCTTCCTAAAAAAGGAGCAGCAGAGGGTGCTGTCCATATCATGAAGATAGCACTTGCATGCTTGCATCCCAATCCGCAATCCCGACCTACAATGG GAAGAATTTCTTCGGAGCTTGCAACTAAGTGGCCTTCTCTGCCAAAGGAATTTGACACCATAAGTTTGGAAGATCTCTTCTCACATTCAGTTAGTGTGGT CGACTGA
AA sequence Show only first row Show all	>Potri.019G129300.1 pacid=42773456 polypeptide=Potri.019G129300.1.p locus=Potri.019G129300 ID=Potri.019G129300.1.v4.1 annot-version=v4.1 MMSLLHKPFFSIFLHVLIFLLLHMFYFSSFFVLADHTSSKTSIFGAATSAANSKVAGGNIKEAEALLKWKASLDNQSQSLLSSWVGTSPCIDWIGITCDG SGSVANLTFPHFGLRGTLYDFNFSSFPNLSVLDLSNNSIHGTLPSHIGNLSKITQLGLCYNDLTGSIPSEIGSLKSITDLVLCRNLFSGSIPHEIGKLTS LSRLSLAVNNLTGSIPSSIGNLKNLSNLFLWDNKLSGRIPSEIGQLKSLVGLSLANNKLHGPLPLEMNNLTHLKQFHLSDNEFTGHLPQEVCHGGVLENL TVANNYFSGSIPKSLKNCTSLHRLRLDRNQLTGNISEDFGIYPHLDYVDLSYNNFYGELSLKWGDYRNITSLKISNNNVSGEIPAELGKATQLQLIDLSS NHLEGTISKELGGLKLLYNLTLSNNHLSGAIPSDIKMLSSLKILDLASNNLSGSIPKQLGECSNLLLLNLTDNKFTNSIPQQIGFLRSLQDLDLSCNFLA QEIPWQLGQLQMLETLNVSHNMLSGLIPRTFKDLLSLTVVDISSNKLQGPIPDIKAFHNASFEALRDNMGICGNASGLKPCNLPKSSRTVKRKSNKLVIL IVLPLLGSLLLVIVVIGALFILRQRARKRKAEPGNIEQDRNLFTILGHDGKLLYENIIAATEEFNSNYCIGEGGYGIVYKAVMPEERVVAVKKLHRSQTD KLSDFKAFETEVCVLANIRHRNIVKLYGFCSHAKHSFLVYEFIERGSLRKIITTEEQAIELDWMKRLNVVKGMAGALSYLHHSSSPPIIHRDITSNNVLL DLEYEAHVSDFGTARMLMPDSSNWTSFAGTFGYTAPELAYTMKVTEKCDVYSFGVVTMEVMMGRHPGDLISTLSSQATSSSSSMPPISQQTLLKDVLDQR ISLPKKGAAEGAVHIMKIALACLHPNPQSRPTMGRISSELATKWPSLPKEFDTISLEDLFSHSVSVVD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129300 [exp]	0	1
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	2.23	0.9244
					Potri.019G129350 [exp]	2.44	0.8918
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.007G050000 [exp]	2.44	0.9113
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	3.46	0.9025
					Potri.005G162201 [exp]	3.87	0.9071
AT5G43020			Leucine-rich repeat protein ki...		Potri.014G024400 [exp]	4.00	0.8871
					Potri.001G410554 [exp]	4.47	0.8936
AT1G35830			VQ motif-containing protein (....		Potri.002G094900 [exp]	5.09	0.8659
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.013G041000 [exp]	7.14	0.8538
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	7.74	0.8664

Compare expression of checked genes

Potri.019G129300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.