Plant FIBer expression Database

Potri.019G129350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G069350
[exp]
44 / 1e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G129350.1 pacid=42773880 polypeptide=Potri.019G129350.1.p locus=Potri.019G129350 ID=Potri.019G129350.1.v4.1 annot-version=v4.1
ATGGCCTTTCTTCACGCGTTCGTGCCTCACGATCGTGAGGCACGAACGCCTCTGTTTCTTAGAGAAGAAACAGGGGCAGAAAACTTGCTCCCCTCTGTAC
AGTTTCTGTTCTTGCGTCTTGTTGTGTTCCCGGTGTTACTTCCTCTCTGTAAGCAGGGAAACGGAGACGTGATGGAGGACTGGTGGGCTAGTTGCTTTCT
TCCTCCGCTGCTCGTGGCCTCTCTCCGTGGCCTCCTCTGTTTCTTTGAGAAGAAACAGAGGAACGAAAGTTTTTTTCTATTCTTCCCCCGGTTCTGTGTT
TCTCTAGTGGCTTTTCGGTTATGTCATTTTCCCCCCCCTTTGCCGGTTCTCCTTCTCTGGTTTTTATAA
AA sequence
>Potri.019G129350.1 pacid=42773880 polypeptide=Potri.019G129350.1.p locus=Potri.019G129350 ID=Potri.019G129350.1.v4.1 annot-version=v4.1
MAFLHAFVPHDREARTPLFLREETGAENLLPSVQFLFLRLVVFPVLLPLCKQGNGDVMEDWWASCFLPPLLVASLRGLLCFFEKKQRNESFFLFFPRFCV
SLVAFRLCHFPPPLPVLLLWFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G129350
[exp]
0 1
AT4G08850 Leucine-rich repeat receptor-l... Potri.019G129300
[exp]
2.44 0.8918
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Potri.010G223200
[exp]
2.82 0.8423
AT4G31500 SUR2, RNT1, RED... SUPERROOT 2, RUNT 1, RED ELONG... Potri.002G025425
[exp]
2.82 0.8910
AT4G33230 Plant invertase/pectin methyle... Potri.006G134700
[exp]
3.16 0.8620
AT5G07050 nodulin MtN21 /EamA-like trans... Potri.006G033500
[exp]
3.46 0.8580
AT1G15190 Fasciclin-like arabinogalactan... Potri.001G306800
[exp]
5.47 0.8776
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.007G050000
[exp]
5.65 0.8764
AT1G05690 BT3 BTB and TAZ domain protein 3 (... Potri.017G009700
[exp]
9.27 0.7694
AT4G37770 ACS8 1-amino-cyclopropane-1-carboxy... Potri.002G113900
[exp]
11.48 0.7467
AT2G28305 ATLOG1 LONELY GUY 1, Putative lysine ... Potri.004G212200
[exp]
12.96 0.7925

Potri.019G129350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.