Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66750 269 / 2e-85 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT5G18620 116 / 1e-29 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 115 / 3e-29 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT2G13370 113 / 1e-28 CHR5 chromatin remodeling 5 (.1) AT3G12810 107 / 1e-26 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT4G31900 107 / 2e-26 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT3G06010 104 / 2e-25 ATCHR12 Homeotic gene regulator (.1) AT2G25170 104 / 2e-25 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT5G19310 103 / 4e-25 Homeotic gene regulator (.1) AT5G44800 100 / 3e-24 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G129900 [exp] 371 / 5e-125 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 333 / 5e-110 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.010G021400 [exp] 113 / 1e-28 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 112 / 2e-28 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.009G047800 [exp] 112 / 4e-28 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.001G253400 [exp] 109 / 2e-27 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.018G021100 [exp] 108 / 4e-27 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.006G262200 [exp] 107 / 1e-26 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.003G022100 [exp] 105 / 6e-26 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024019 [exp] 292 / 1e-93 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10041735 [exp] 289 / 6e-93 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10033967 [exp] 113 / 2e-28 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10012813 [exp] 113 / 2e-28 AT5G18620 952 / 0.0 chromatin remodeling factor17 (.1.2) Lus10005339 [exp] 108 / 6e-27 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10022423 [exp] 108 / 7e-27 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10041019 [exp] 107 / 1e-26 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10035436 [exp] 106 / 3e-26 AT3G57300 1875 / 0.0 INO80 ortholog (.1.2) Lus10031050 [exp] 106 / 5e-26 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10034064 [exp] 105 / 6e-26 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G129740.1 pacid=42773910 polypeptide=Potri.019G129740.1.p locus=Potri.019G129740 ID=Potri.019G129740.1.v4.1 annot-version=v4.1 ATGGATCAATCAGCCTTTTTAGAGAGACCGATTACTCTTGATGAAGCGCATGAGGCGGTTTTGGATTGTGACAGCCTGACAGGGCGAAATCTCCTGGGCC AGATGGTTTCAACTTCAGATTTTACAGGAAAGATCCAGGAATTCAATGACGAGAACAGTCAGTATAGGATTTTTCTTCTTAGCACAAGAGCTGGTGGATT GGGTATCAACCCCACTTCAGCTGATACCTGTATCCTGTATGACAGTAACCCTCAAATGGATCTGCAAGCCATGGATAGATGTCACCGAATTGGGCAAACC AAGCCTGTTCATGTTTACAGGCTTACAACAGCTCAGTCTGTTGAGGGTCGTATTTTGAAAAGAGCTTTTAGTAAGTTGAAGCTTGAGCATGTGGTCATTG GAAAAGGACAGTTTCATCAAGAGCGAACCAAGTCTACCGGCACAGATCTCATGGAGGAGGAGATGCTGGCCCTGCTTCGGGATGAAGAAACAGCAGAAGA CAAGTTGATACAGACAGATATCAGTGATGAAGATTTAGAGAGGGTGTTGGATCGCAGTGATTTGGTCGTAGGCTCATCATCAGATGACATAGAAAACATG GCTGCCACTGTTTCAATTCCTCTGAAAGGGCCTGGTTGGGAGGTGGTTGTACCGACTGCCAGTGGAGGCGTGCTCTCTACCCTTAATAGTTAG
AA sequence Show only first row Show all	>Potri.019G129740.1 pacid=42773910 polypeptide=Potri.019G129740.1.p locus=Potri.019G129740 ID=Potri.019G129740.1.v4.1 annot-version=v4.1 MDQSAFLERPITLDEAHEAVLDCDSLTGRNLLGQMVSTSDFTGKIQEFNDENSQYRIFLLSTRAGGLGINPTSADTCILYDSNPQMDLQAMDRCHRIGQT KPVHVYRLTTAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSTGTDLMEEEMLALLRDEETAEDKLIQTDISDEDLERVLDRSDLVVGSSSDDIENM AATVSIPLKGPGWEVVVPTASGGVLSTLNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	0	1
AT1G18090			5'-3' exonuclease family prote...		Potri.015G041400 [exp]	1.00	0.9498
AT3G63480			ATP binding microtubule motor ...		Potri.005G038900 [exp]	2.00	0.9437
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	2.44	0.9350
AT3G50120			Plant protein of unknown funct...		Potri.016G039700 [exp]	3.16	0.9235
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	3.87	0.9414
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	4.47	0.9353
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	5.74	0.9226
AT3G50150			Plant protein of unknown funct...		Potri.016G040100 [exp]	6.00	0.9205
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	6.32	0.9286
AT4G37110			Zinc-finger domain of monoamin...		Potri.012G044400 [exp]	6.48	0.9348

Compare expression of checked genes

Potri.019G129740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.