Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40620 289 / 4e-95 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 268 / 1e-87 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G31370 192 / 1e-57 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT1G06070 183 / 1e-53 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G38900 177 / 3e-50 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G43700 161 / 4e-46 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G21230 160 / 4e-44 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G58120 95 / 9e-22 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 95 / 1e-21 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT2G12900 92 / 5e-21 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156900 [exp] 556 / 0 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 294 / 1e-97 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G190700 [exp] 202 / 4e-62 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.002G069500 [exp] 201 / 3e-61 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.017G027400 [exp] 187 / 3e-55 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G125400 [exp] 186 / 3e-53 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.004G163800 [exp] 181 / 3e-51 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.007G130800 [exp] 176 / 4e-51 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 94 / 2e-21 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024204 [exp] 373 / 7e-129 AT1G06850 271 / 5e-90 basic leucine-zipper 52 (.1.2) Lus10009907 [exp] 372 / 1e-128 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2) Lus10042211 [exp] 362 / 5e-124 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008605 [exp] 355 / 5e-121 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012881 [exp] 272 / 2e-88 AT2G40620 290 / 7e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10030531 [exp] 261 / 2e-83 AT2G40620 286 / 4e-93 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018899 [exp] 193 / 2e-58 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 190 / 3e-57 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10029773 [exp] 184 / 1e-54 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042802 [exp] 181 / 2e-53 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.019G130000.1 pacid=42774457 polypeptide=Potri.019G130000.1.p locus=Potri.019G130000 ID=Potri.019G130000.1.v4.1 annot-version=v4.1 ATGTCTTCTTCAATGGAAACTCAAGATCCACAATCTAAACCACCACAAAATTCAGATCCAACAAAACCCCACAACCCCAACCCCACAACACCACCTGCTT CTTCGATGCTCAACAACATTCGAGGTGGAGCCCTCCATAGGAGGGCACGTTCAGAGATGAGTTTTAGGTTACCAGAAGACATGACAATGATGATGATGGA TATCCACCCATCAGATCAAATCAATGGTGGTAATGGTAATGGTAATGGTACTGGTAATGGTGGAGGGGGGTCTTCAACAGGAAGCTTAGAAGAGATCGGA TCAGAGGATGATTTGTTCTCAACCTACATTGATGTTGATAAGCTAACTGGAGGCAATAGTGGGAATGGAGCTGGAGGGGGGGTTCAGAATGATAATGATA ATAATATGAACGGAGAGAAAGCTGGGGTTTCGGGTTCTGGTACTTCCAGGCCTAAGCATAGGCATAGTAATTCTGTTGATGGGAGTGTGTTTGGTGGAGG AGAGGTAATGGATGCTAAGAAAGCAATGCCGCCTGATAAGTTAGCTGAGCTTTGGAATATTGATCCTAAAAGAGCTAAAAGGATACTTGCAAATAGGCAG TCTGCCGCCCGCTCTAAAGAGAGGAAAGCCCGATACATACTGGAACTTGAGCGCAAAGTTCAGACCCTCCAAACAGAAGCTACCACTCTTTCTGCACAAC TAACTTTATTTCAGAGGGACACAACTGGTCTAAGCTCAGAAAACACAGAGCTTAAGCTTCGGTTGCAAGCTATGGAGCAACAGGCTCAGTTGCGCGATGC TCTGAATGAAGCACTGAAGAAGGAGGTTGAGAGGCTCAGGATAGCCACCGGGGAAATGGTAAGCCCTTCCGAGTCATTCAACTTGGGAATGCACCAAATG CCCTTCACCCAGCCAAACTTTTTCCCACTTCCTCCACAGCCAGGATCTTCAGGTCACCCAAACATGCAATTACCATCATTTACTCATACCCCGCCTAGCA TGTCCACCCACCATCTACAGCAGGCAGATTCTCACAATCTCTCAGACTACATGCAAAACGATCCTATCAGACAGTTACAGGGGCTTGATATCAGTAATAA AGGCTTAAATATTGTAAAGTCAGAAGGTCCCTCGCTTTCTGCAAGTGAAAATAGCTCCACATTTTGA
AA sequence Show only first row Show all	>Potri.019G130000.1 pacid=42774457 polypeptide=Potri.019G130000.1.p locus=Potri.019G130000 ID=Potri.019G130000.1.v4.1 annot-version=v4.1 MSSSMETQDPQSKPPQNSDPTKPHNPNPTTPPASSMLNNIRGGALHRRARSEMSFRLPEDMTMMMMDIHPSDQINGGNGNGNGTGNGGGGSSTGSLEEIG SEDDLFSTYIDVDKLTGGNSGNGAGGGVQNDNDNNMNGEKAGVSGSGTSRPKHRHSNSVDGSVFGGGEVMDAKKAMPPDKLAELWNIDPKRAKRILANRQ SAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQRDTTGLSSENTELKLRLQAMEQQAQLRDALNEALKKEVERLRIATGEMVSPSESFNLGMHQM PFTQPNFFPLPPQPGSSGHPNMQLPSFTHTPPSMSTHHLQQADSHNLSDYMQNDPIRQLQGLDISNKGLNIVKSEGPSLSASENSSTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.019G130000 [exp]	0	1
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	2.00	0.9578	Pt-NPSN11.1
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053500 [exp]	2.82	0.9597
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	4.00	0.9535
AT4G16850			unknown protein		Potri.018G097900 [exp]	4.00	0.9331
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.008G100000 [exp]	4.24	0.9544	ARF1.3
AT1G62981			Protein of unknown function (D...		Potri.001G112800 [exp]	4.89	0.9473
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.008G128600 [exp]	5.47	0.9499
AT1G64800			DNA binding;sequence-specific ...		Potri.016G001800 [exp]	8.30	0.9283
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.011G069500 [exp]	9.38	0.9362
AT4G11950			Protein of unknown function (D...		Potri.003G119400 [exp]	10.09	0.9328

Compare expression of checked genes

Potri.019G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.