Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31930 51 / 7e-07 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT4G34390 48 / 5e-06 XLG2 extra-large GTP-binding protein 2 (.1) AT2G23460 47 / 1e-05 ATXLG1, XLG1 extra-large G-protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157100 [exp] 487 / 1e-174 AT1G31930 51 / 8e-07 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 56 / 2e-08 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 53 / 1e-07 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.009G109400 [exp] 51 / 8e-07 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 50 / 1e-06 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.004G148300 [exp] 50 / 2e-06 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.015G031100 [exp] 48 / 6e-06 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.005G131200 [exp] 48 / 7e-06 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 46 / 2e-05 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009897 [exp] 241 / 2e-78 AT4G34390 52 / 3e-07 extra-large GTP-binding protein 2 (.1) Lus10024210 [exp] 226 / 2e-72 AT1G31930 52 / 2e-07 extra-large GTP-binding protein 3 (.1.2.3) Lus10042206 [exp] 220 / 3e-68 AT1G31930 54 / 1e-07 extra-large GTP-binding protein 3 (.1.2.3) Lus10008608 [exp] 199 / 2e-61 AT1G31930 50 / 2e-06 extra-large GTP-binding protein 3 (.1.2.3) Lus10010421 [exp] 54 / 9e-08 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 54 / 1e-07 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10023838 [exp] 48 / 9e-06 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 47 / 1e-05 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 47 / 2e-05 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G130200.1 pacid=42773843 polypeptide=Potri.019G130200.1.p locus=Potri.019G130200 ID=Potri.019G130200.1.v4.1 annot-version=v4.1 ATGGGGGACTTGAAAACGTTGGCAAAGGCAAGAATGGAGCTTGAAGAATTGTATTCAGGAATCCCAGATGATTCAGTCAATCTCACTTTTCAAGACCTAG CAATACATGTAAAACAAAGCAAAAATAGTACACCAGAGAAGATAAACACCACTACCAATAAAGAACCAATTCAAGAAGCCAAAACCCCTAAACAAGTTTC TCCTCTAACCAAGTTGCCTAGCCTTGATTTCAACAGAGGTTTACAGGCTTCCAAAAATCATCAACAACCTCGTCATCTTGCTGAAGGGCACCCACTTGGT CAATCCCATAAACATAACCTGCAGCATGATGATACTCATAGTCCGTGTGGCACTATTGGATCATATCATCATGATCAAAGCAATCATGGTCATGCAAATA TAGGTAGAAAAGGTCCTTCAAAATCAAGGTTTGCACCGGAGAGGAGCAGGGAATTTGATGATGTGAGTGTTATGAGCATGGATTCTATGTACCAAGAAAG AAGTGGAAGACCTCGTCGCCCTGGAATCCCTCACTCCAATATTTGCGCCGTTTGCTCTACTTACATCTATATTTTTCGGCATCGTTGCTTGGTTTGTGGA AGAGTCCATTGCCGAAATTGTGTAAGCATAGGAATGGGAGAGATGACAGAAGGAAGAAAGTGCATCGACTGTTTAGGGAGAAGGTTCAGTCAAAGATACA TTAGTAGAGCAGGAATGGTAGGGTGTTGTTCGGGGTATCCTAGTGATGTAAAGCAGGCAGAGCTCAGGTGGGCTGAGAAGGGGCCGAGAAGGGCAGGGGA GAGAGCATTCGGCCATGGCAACATGACCTCAAGATCAAGAAACCCTATGTCGACTCCTCCAAGGCCCTCCAATAAGGCAGGTGTTAGCATGAGTCAAGAT CTTCCTTCTTTTGTTACAAGCTCGCCTTATTCTCCTTACAGTACTCCTAAACATCACCAGCTGCCCTTGTAG
AA sequence Show only first row Show all	>Potri.019G130200.1 pacid=42773843 polypeptide=Potri.019G130200.1.p locus=Potri.019G130200 ID=Potri.019G130200.1.v4.1 annot-version=v4.1 MGDLKTLAKARMELEELYSGIPDDSVNLTFQDLAIHVKQSKNSTPEKINTTTNKEPIQEAKTPKQVSPLTKLPSLDFNRGLQASKNHQQPRHLAEGHPLG QSHKHNLQHDDTHSPCGTIGSYHHDQSNHGHANIGRKGPSKSRFAPERSREFDDVSVMSMDSMYQERSGRPRRPGIPHSNICAVCSTYIYIFRHRCLVCG RVHCRNCVSIGMGEMTEGRKCIDCLGRRFSQRYISRAGMVGCCSGYPSDVKQAELRWAEKGPRRAGERAFGHGNMTSRSRNPMSTPPRPSNKAGVSMSQD LPSFVTSSPYSPYSTPKHHQLPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.019G130200 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.017G087800 [exp]	1.00	0.8018
AT1G44970			Peroxidase superfamily protein...		Potri.002G031200 [exp]	7.21	0.7881
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	8.06	0.7003
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.014G101100 [exp]	8.48	0.7088
					Potri.008G031400 [exp]	20.66	0.7152
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.007G123000 [exp]	21.16	0.6989
AT5G01830			ARM repeat superfamily protein...		Potri.016G134000 [exp]	21.42	0.6916
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.006G070400 [exp]	22.84	0.6344
AT3G01175			Protein of unknown function (D...		Potri.017G084200 [exp]	24.79	0.6266
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037500 [exp]	25.80	0.6914

Compare expression of checked genes

Potri.019G130200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.