Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	C4H1,Pt-CYP73.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30490 812 / 0 REF3, CYP73A5, ATC4H REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) AT2G40890 228 / 1e-68 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G22710 211 / 9e-62 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 209 / 4e-61 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G67310 205 / 7e-60 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT1G74550 196 / 1e-56 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT3G26280 194 / 8e-56 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT5G07990 189 / 5e-54 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G48280 188 / 1e-53 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT4G13310 187 / 3e-53 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157900 [exp] 890 / 0 AT2G30490 826 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.018G146100 [exp] 602 / 0 AT2G30490 622 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.016G031000 [exp] 217 / 2e-64 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 214 / 2e-63 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.006G033300 [exp] 211 / 3e-62 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.015G085800 [exp] 202 / 1e-58 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089900 [exp] 201 / 4e-58 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.015G086000 [exp] 199 / 9e-58 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G090000 [exp] 198 / 3e-57 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034449 [exp] 845 / 0 AT2G30490 882 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10035011 [exp] 803 / 0 AT2G30490 867 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10021671 [exp] 741 / 0 AT2G30490 778 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10027598 [exp] 584 / 0 AT2G30490 630 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019110 [exp] 524 / 0 AT2G30490 555 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10033524 [exp] 214 / 3e-63 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020847 [exp] 213 / 1e-62 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10019457 [exp] 212 / 2e-62 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 206 / 4e-60 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 202 / 2e-58 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.019G130700.1 pacid=42773096 polypeptide=Potri.019G130700.1.p locus=Potri.019G130700 ID=Potri.019G130700.1.v4.1 annot-version=v4.1 ATGGATCTCCTCCTCTTGGAGAAGACCCTGTTGGGTTCTTTTGTTGCCATTCTTGTTGCCATTCTTGTTTCACAACTACGTGGCAAACGTTTTAAACTCC CACCTGGTCCTTTACCGGTCCCCGTGTTTGGCAACTGGCTTCAAGTTGGTGATGATCTGAACCACCGTAACCTCACTGATTTGGCCAAGAAGTTTGGTGA CATCCTCCTCCTCCGTATGGGCCAACGTAATCTTGTTGTCGTCTCCTCACCTGACCTAGCTAAAGAGGTTCTGCACACGCAAGGTGTTGAATTCGGGTCA AGAACAAGAAACGTTGTTTTTGATATTTTCACTGGGAAAGGTCAAGACATGGTTTTCACTGTCTATGGTGAACATTGGAGGAAGATGAGGAGAATCATGA CAGTCCCTTTCTTCACGAACAAGGTTGTTCAACAATATAGGTATGGATGGGAAGAGGAAGCGGCTCAAGTTGTCGAGGATGTTAAGAAAAACCCCGAGGC TGCAACTCATGGGATTGTTTTGAGGAGGAGACTGCAACTGATGATGTATAACAACATGTATAGGATCATGTTTGATAGGAGATTTGAGAGCGAAGAGGAT CCTTTGTTTAATAAGCTTAAGGCTTTGAATGGTGAGAGGAGCAGATTGGCTCAGAGTTTTGATTACAATTACGGTGATTTTATCCCCATTTTGAGACCTT TCTTGAGAGGTTACTTGAAGATCTGCAAGGAGGTTAAAGAGAGAAGGCTGCAACTCTTCAAGGACTACTTTGTTGAAGAGAGGAAGAAACTTGGAAGCAC AAAGAGCATGAGCAATGAAGGCTTGAAATGTGCAATTGATCATATTTTGGATGCTCAAAAGAAAGGAGAGATCAATGAGGACAACGTTCTTTACATCGTG GAGAACATCAATGTTGCTGCAATTGAGACAACACTGTGGTCGATTGAGTGGGGAATTGCTGAGCTTGTGAACCATCCTGAAATCCAGAAGAAGTTGCGTG ATGAGCTCGATACCGTGCTTGGTCCGGGTCACCAAATCACTGAGCCTGACACCAACAAGCTGCCTTACCTTAATGCTGTCATCAAAGAGACTCTCCGGCT CAGGATGGCGATTCCTCTGCTTGTCCCACACATGAACCTCCATGATGCTAAGCTTGGAGGTTTTGACATCCCCGCCGAGAGCAAGATCCTGGTAAACGCA TGGTGGCTTGCCAACAACCCTGCTAAGTGGAAAAACCCTGAAGAATTCAGGCCAGAGAGGTTCTTCGAAGAGGAGGCCAAGGTTGAGGCCAATGGCAATG ATTTCAGGTACCTCCCCTTTGGAGTTGGGAGAAGGAGCTGCCCTGGAATTATTCTTGCATTACCAATTCTTGGTATTACTCTGGGACGTTTGGTACAGAA TTTTGAGCTCTTGCCTCCTCCTGGACAGTCCAAGATTGACACCTCAGAGAAAGGTGGACAGTTCAGCTTGCACATTTTGAAACACTCCACCATTGTTGCA AAGCCAAGGTCCTTTTAG
AA sequence Show only first row Show all	>Potri.019G130700.1 pacid=42773096 polypeptide=Potri.019G130700.1.p locus=Potri.019G130700 ID=Potri.019G130700.1.v4.1 annot-version=v4.1 MDLLLLEKTLLGSFVAILVAILVSQLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDILLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGS RTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPEAATHGIVLRRRLQLMMYNNMYRIMFDRRFESEED PLFNKLKALNGERSRLAQSFDYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLGSTKSMSNEGLKCAIDHILDAQKKGEINEDNVLYIV ENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGHQITEPDTNKLPYLNAVIKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNA WWLANNPAKWKNPEEFRPERFFEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVA KPRSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.019G130700 [exp]	0	1	C4H1,Pt-CYP73.3
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	3.60	0.9113
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.008G034800 [exp]	4.00	0.8932
AT3G52790			peptidoglycan-binding LysM dom...		Potri.008G030200 [exp]	8.83	0.8861
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	9.38	0.9005	OMT1.1
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	9.48	0.8940	Pt-SAM1.1
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.007G081000 [exp]	9.89	0.8821	SK3
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.002G146400 [exp]	12.36	0.8737
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	12.40	0.8713
AT5G43150			unknown protein		Potri.008G152200 [exp]	12.48	0.8678
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.003G114100 [exp]	13.26	0.8669	MYB85.1

Compare expression of checked genes

Potri.019G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.