Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-P68.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55150 320 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 315 / 4e-100 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58570 308 / 5e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 306 / 3e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47330 304 / 3e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 300 / 3e-94 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G20920 305 / 6e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G33730 293 / 2e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G33370 279 / 7e-87 DEA(D/H)-box RNA helicase family protein (.1) AT5G51280 280 / 8e-87 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158000 [exp] 842 / 0 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G038300 [exp] 308 / 1e-98 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G007900 [exp] 310 / 4e-98 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 302 / 9e-95 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G257400 [exp] 313 / 1e-94 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G196000 [exp] 301 / 1e-94 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 301 / 1e-94 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G061900 [exp] 300 / 2e-94 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 298 / 1e-93 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030075 [exp] 319 / 1e-101 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 313 / 3e-100 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 312 / 4e-100 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015977 [exp] 311 / 1e-99 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 312 / 4e-99 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 309 / 1e-97 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 306 / 2e-96 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10016207 [exp] 305 / 4e-96 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 304 / 9e-96 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037527 [exp] 295 / 2e-90 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.019G130900.1 pacid=42774285 polypeptide=Potri.019G130900.1.p locus=Potri.019G130900 ID=Potri.019G130900.1.v4.1 annot-version=v4.1 ATGTCGTATATCCCTCCTCACCTGAGAAACTCAAGCTCAACCACTACCGTTACTACTCGCAGAACTCAGTCACCGCCTTTAACAGACACTAATCTCTCCC ATTCCTCTTCAAATTCCACCTCCTCCGCCCCTTCTTCTTTCTCCACATTCAACTCTCTCTCCTTACGGACCTCCGCCTCCGTCGCGCGAACCATCTCAGT TCCTCAACCTGTTTTTCCTCAGTGGACGCCCTCCGACCGCGTCCTTCGCTTCACTCCAGATCAGATTGAAGAAATTCGTTCTCAGCTCAAAATAAATGTC AGTGTTGCTTCGGGTTCACCTCCTGCACCTGCGCCTATTGAATCATTTGAAGATATGTGTTTGCATCAAAGTATCATGAAGGATATTGCGCATCATGAGT ATACGCGACCGACTTTGATTCAGGCTCAGGCAATGACAGTTGCGCTTAGTGGAAGGGATTTGTTGGGTTGTGCTGAAACTGGTAGTGGAAAAACTGCAGC ATTTACCATTCCTATGATACAGCATTGCTTGGCTCAACCTCCTGTTCAGCGTGGTGATGGACCATTGGCGATGGTGTTGGCTCCTACCAGAGAACTTGCT CAGCAAATTGAAAAAGAGGTTAAACGTTTTAGTAGATCTCTTGAGTCCTTCAGAACTGCCATCGTGGTGGGTGGAACAAAGTCTGCTGACCAGGGATCAG AGCTACGAGCGGGAGTGGATGTAATTGTTGCTACTCCTGGAAGATTAATTGATCATTTACAACAAGGAAACACTTCCCTTTCCAGAATTTCATTTATCGT TCTGGATGAAGCTGATAGAATGCTTGACATGGGCTTTGAACCACAGATTAGAGAGGTTATGCACAACCTTCCAGAGAAGCATCAAACTTTGCTGTTCAGT GCAACTATGCCTGTGGAAATTGAAACACTAGCACAGGAGTACTTAATTAGCCCTGTTCAAGTCAAGGTAGGAAAAGTGAGTAGCCCTACTGCAAATGTGT CTCAAATTCTGACAAAGGTTTCTGCAAGTGAGAAGATTGATTGCCTTCTAGCTCTGCTTGTGGAGGACGCATCTCAGGCTGAGAAATCCAACCAATCCTT TCCATTGACTATTGTGTTTGTGGAGAGGAAGACAAGGTGCAATGAAGTTGCTGAAGCTTTGGTAGCACAAGGTTTACAGGCAGTTGCTCTTCATGGAGGC CGCAGTCAGAGTGAAAGAGAAGCTGCTTTGCATGATTTTAGGAGTGGATCTACAAATATTTTGGTTGCCACTGATGTTGCATCTCGTGGATTGGATGTAA CTGGAGTTGCTCATGTGATTAATCTGGATCTCCCAAAGACAATGGAAGATTATGTGCATCGTATTGGAAGGACAGGCCGTGCAGGGTCAACTGGCCAAGC TACTTCATTTTACACTGATCGAGATCTGTTCCTTGTGGCACAAATAAAGAAAGCAATAGCAGATGTCGAATCGGGGAACACAGTTGCTTTTGCAACTGGC AAGGCTGCAAGAAGGAAGGAAAGAGAAGCAGCTGCTTCACAAAAGGAAGCTAGGAATGCTCTGTCCAAGGTGATGGGATCCACATGTATAAACATTGAGG ATAAGTATAGGTTCATGATAGCCCCTTCAGTCATCACAAGTGAGGGTGCAGCTGACAGTGCCTGGGATGATTAG
AA sequence Show only first row Show all	>Potri.019G130900.1 pacid=42774285 polypeptide=Potri.019G130900.1.p locus=Potri.019G130900 ID=Potri.019G130900.1.v4.1 annot-version=v4.1 MSYIPPHLRNSSSTTTVTTRRTQSPPLTDTNLSHSSSNSTSSAPSSFSTFNSLSLRTSASVARTISVPQPVFPQWTPSDRVLRFTPDQIEEIRSQLKINV SVASGSPPAPAPIESFEDMCLHQSIMKDIAHHEYTRPTLIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPVQRGDGPLAMVLAPTRELA QQIEKEVKRFSRSLESFRTAIVVGGTKSADQGSELRAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMHNLPEKHQTLLFS ATMPVEIETLAQEYLISPVQVKVGKVSSPTANVSQILTKVSASEKIDCLLALLVEDASQAEKSNQSFPLTIVFVERKTRCNEVAEALVAQGLQAVALHGG RSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDLFLVAQIKKAIADVESGNTVAFATG KAARRKEREAAASQKEARNALSKVMGSTCINIEDKYRFMIAPSVITSEGAADSAWDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.019G130900 [exp]	0	1	Pt-P68.1
AT5G15380		DRM1	domains rearranged methylase 1...		Potri.001G347000 [exp]	1.73	0.6969
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	6.48	0.6540
AT3G42170			BED zinc finger ;hAT family di...		Potri.001G383800 [exp]	6.78	0.6947
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	7.21	0.6626
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206766 [exp]	7.74	0.5981
					Potri.013G082000 [exp]	12.64	0.6255
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	20.85	0.6623	PFT1.1
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	23.32	0.6247
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	24.00	0.6239
AT5G12000			Protein kinase protein with ad...		Potri.018G146966 [exp]	26.07	0.6164

Compare expression of checked genes

Potri.019G130900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.