Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 328 / 5e-105 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT1G03080 144 / 8e-36 kinase interacting (KIP1-like) family protein (.1) AT3G22790 142 / 6e-35 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 134 / 3e-32 kinase interacting (KIP1-like) family protein (.1) AT4G02710 132 / 7e-32 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 126 / 4e-30 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 120 / 4e-28 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 119 / 1e-27 Kinase interacting (KIP1-like) family protein (.1) AT2G47920 98 / 6e-23 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158100 [exp] 928 / 0 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G061600 [exp] 285 / 2e-88 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Potri.010G083300 [exp] 150 / 1e-37 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 145 / 5e-37 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 146 / 2e-36 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 143 / 2e-35 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 125 / 8e-30 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.005G147300 [exp] 125 / 1e-29 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 123 / 4e-29 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019111 [exp] 468 / 3e-159 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10034448 [exp] 453 / 2e-153 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10029012 [exp] 147 / 7e-38 AT5G05180 146 / 5e-39 unknown protein Lus10014687 [exp] 148 / 8e-37 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 147 / 1e-36 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10034251 [exp] 141 / 5e-36 AT5G05180 149 / 4e-40 unknown protein Lus10042627 [exp] 144 / 8e-36 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 144 / 2e-35 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 134 / 2e-32 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 126 / 6e-30 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.019G131000.4 pacid=42773527 polypeptide=Potri.019G131000.4.p locus=Potri.019G131000 ID=Potri.019G131000.4.v4.1 annot-version=v4.1 ATGGCTTCTCCGATGGTCCCGTCTAAGAATTTCAAGGGATTGCAAACAAGAAAATCACATTCCTGGTGGTGGGATAGTCATATCAGTCCGAAAAATTCCA AGTGGCATACTGAGAATCTTGAGGAGATGGACCAGAGCGTTAAGCGGATGCTGAAGCTAATTGAAGAGGATGGAGACTCATTTGCTAAAAAGGCTGAGAT GTATTATCAGAAGAGACCAGAATTGATTTCTCATGTAGAGGAGTTCTACCGCATGTACCGATCTCTGGCAGAACGTTATGATCACGTGACAGAAGAATTA AGGAAGAGCATTCCATCAGATCTCCAGTCCCAGGGCTCTGGAATTTCTGACGTTATCTTTGAACCACCTTCTCCTGCTCGTGAACTAAAACCAAGCCGTC TTAAACCTGGCCCTCGAGCTGCTGGTTTTGATTTCTTCTTGGGCTCTGGTGGCAGTGGCGATCGTCACCATAAAGAAGTAGACGAATTATCCACGTTGAC GGATTCAGAATCAGAATCTGATGATTCTTCAGTAAACAATTACTCAGGTCTATCTGGGAATAGTGGTGACCAAGGACTGTCCCGGAGAATAATTGATTTA GAAATTGAGCTTCGTGAAACAAAAGAAAAGCTACGGATGCAGCAAGATGAGAGTGTTGATGGCTCATTTAGGGGCGTCAGAAATGAAGATTCTGAGGATG TTCTTGCAGAAATTACAGGGTGTGAGCGAGATCTGACAATTGCAAATGAGGAGTTACGGCTGTCAGAAGAAGAGGTTACTCGATTGAATACTGAGCTTCA AAAATGTAGGTCATCTGAAGTCTCTGATGGTTTGCAGTCTGAGTTCGCATCGCCAGCTGAGAGCAAGGTCACAACCAGGGAGGTTGAGCTGGAATTTGAG GTAAATCAAGCTTCTCATCTTCAACAAAGGATTGGTGGGTCGGAAGCTGAAACTTTGGACTCCAATGTTAAGATTCAAGCACTAATGGAAGAACTCAGGA TTGCTAAAGAGAGGCTTCATGTTTCAGAGAAAGAAATAACTACTTTGAAAAAACAACTTGAGGGTGGTGGACCATCTGAAAAAATCAATAATTTGCAAGA TCAACTTGCGTTGGCTCACAAGGAGATAAATACGTTGAAAAACAAGCTCAACGCAGAAAAAAGGGAGGTCTCCAAGCTGCAAGAAAGAACTGCCAGGCTG AAAACTAATCTGTCAGACCGGGATAGTGAGGTGAGAGATCTTAAACTAGCAGTGTCTGATGCTGAGCTGAAGATTTTTCCAGAAAAGGCACAGATCAAGG CTGAAATATCTAGATTGATAGAGGAGGGGACATGCTTGGAGGAGCGGCTGAAAGAACAGGAATCACGTTGCCGTTCTTTAGAGGATGGTATTAGGATGTT CCAGGCTGAGAAGGCAGAAATGCAGGAAACACTTGAACGTGAAATTCAGAAGTTAAAGGAAGACACTGCTGAGCGAGACAGTCGCATAAAATCTGAGAGA GATGAGCTTAATGAGAAAGCTATTACACTTAAAGCAGAGGTAACTTCTAGAGACAACCCGGTCAATCAAATGGATAAGCATCTGCAACAATTACGCATGG AGCATGTGAAGCTACTTGCCGGGGCAGAAGAGGCACGTAAACTAATGGACGAGTTAAGATCAAAAGCTAAGGATTTGGAGGGAGAAGTTGAGAGGCAAAG AATTTTAATCCTGGAAGGAGCAGAAGAGAAACGGGAGGCAATAAGGCAACTGTGTCTCACTCTTGAACATTACAGGAACGGTTATCATACTCTACGACAG GCTTTTGCGGGGCACAAGGGAGTTCCAGTTTTGGCAACATAA
AA sequence Show only first row Show all	>Potri.019G131000.4 pacid=42773527 polypeptide=Potri.019G131000.4.p locus=Potri.019G131000 ID=Potri.019G131000.4.v4.1 annot-version=v4.1 MASPMVPSKNFKGLQTRKSHSWWWDSHISPKNSKWHTENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTEEL RKSIPSDLQSQGSGISDVIFEPPSPARELKPSRLKPGPRAAGFDFFLGSGGSGDRHHKEVDELSTLTDSESESDDSSVNNYSGLSGNSGDQGLSRRIIDL EIELRETKEKLRMQQDESVDGSFRGVRNEDSEDVLAEITGCERDLTIANEELRLSEEEVTRLNTELQKCRSSEVSDGLQSEFASPAESKVTTREVELEFE VNQASHLQQRIGGSEAETLDSNVKIQALMEELRIAKERLHVSEKEITTLKKQLEGGGPSEKINNLQDQLALAHKEINTLKNKLNAEKREVSKLQERTARL KTNLSDRDSEVRDLKLAVSDAELKIFPEKAQIKAEISRLIEEGTCLEERLKEQESRCRSLEDGIRMFQAEKAEMQETLEREIQKLKEDTAERDSRIKSER DELNEKAITLKAEVTSRDNPVNQMDKHLQQLRMEHVKLLAGAEEARKLMDELRSKAKDLEGEVERQRILILEGAEEKREAIRQLCLTLEHYRNGYHTLRQ AFAGHKGVPVLAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30500			Kinase interacting (KIP1-like)...		Potri.019G131000 [exp]	0	1
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	5.65	0.8721
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Potri.001G327000 [exp]	6.48	0.8864
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.001G249100 [exp]	10.14	0.8968
AT5G36210			alpha/beta-Hydrolases superfam...		Potri.002G128700 [exp]	12.24	0.8753
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Potri.009G104300 [exp]	13.41	0.8543
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.015G002300 [exp]	16.73	0.8554	APRR5.3,PtpRR3
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	18.73	0.8599
AT5G47040		LON2	lon protease 2 (.1)		Potri.003G086000 [exp]	22.64	0.8444	LON.2
AT3G18770			Autophagy-related protein 13 (...		Potri.001G309800 [exp]	25.69	0.8703
AT5G15330		ATSPX4	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.017G086600 [exp]	26.32	0.8468

Compare expression of checked genes

Potri.019G131000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.