Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10870 323 / 1e-111 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT5G58310 232 / 4e-76 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT4G16690 222 / 3e-72 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT1G33990 176 / 2e-53 ATMES14 methyl esterase 14 (.1) AT2G23600 172 / 1e-52 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23590 170 / 6e-52 ATMES8 methyl esterase 8 (.1) AT3G29770 171 / 4e-51 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT1G26360 172 / 5e-51 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT2G23610 165 / 6e-50 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23620 165 / 7e-50 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158200 [exp] 446 / 2e-160 AT3G10870 296 / 4e-101 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.019G061700 [exp] 345 / 2e-120 AT3G10870 356 / 1e-124 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.007G036700 [exp] 166 / 1e-50 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.004G116500 [exp] 170 / 2e-50 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.017G096900 [exp] 169 / 4e-50 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.013G104700 [exp] 166 / 3e-49 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.019G077400 [exp] 165 / 4e-49 AT4G09900 547 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.008G096900 [exp] 165 / 1e-48 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.011G082400 [exp] 158 / 2e-47 AT2G23590 254 / 4e-85 methyl esterase 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029011 [exp] 305 / 1e-104 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10034253 [exp] 297 / 1e-101 AT3G10870 288 / 1e-97 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10030707 [exp] 176 / 1e-52 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10003511 [exp] 165 / 5e-49 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10013193 [exp] 167 / 6e-49 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10015532 [exp] 162 / 6e-49 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10037068 [exp] 162 / 1e-47 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10005298 [exp] 160 / 5e-47 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10036917 [exp] 159 / 3e-44 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10022467 [exp] 150 / 3e-44 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.019G131100.1 pacid=42773674 polypeptide=Potri.019G131100.1.p locus=Potri.019G131100 ID=Potri.019G131100.1.v4.1 annot-version=v4.1 ATGAACGAGGAGGCAGGACTTCAAAAACCGCACTTTGTTCTAGTCCATGGAGCATGCCATGGAGCCTGGTGCTGGTACAAGATCAGGTGTCTCATGGAAA CATCTGGCTATAAGGTCACATGCCTAGACCTTAAAAGTGCTGGTATTGATCAGTCCAATCCCAACACGATCCTCACTTTGGATGAGTACAATGCACCCCT TATCGACTTCTTGTCGAATTTGCCACACGATGAAAAGGTTATATTGGTAGGACATAGTGCAGGAGGTTTGAGCTTGACAGACGCTATACACAGATTTCCT AAGAGAATTCATCTGGCTATTTATGTTGCTGCCAACATGTTGAAGCATGGCTTCTCTTCAGATCAAGATTTCAAAGATGGTGACCCTGATGTATCTGAGT ACGGAGAGATAGCTGATTTAGAATACGGGATGGGTCTAGATGAGCCTCCAACAAGTGTCATAATAAAGGAGGAGTTCCGGAAACGAATTCTCTATCAAAT GAGCCCTAAAGAGGACTCCATATTAGCATCAATGCTACTGCGAGCAGGGCCTGTCAGGGCATTCAAAGGTGCTCGATTTGAGGGAGGAAAGGATGCTGAT TCTGTTCCACGAGTATATATTAAGACATTGCACGATCACATTCTAAGACCAGTGCAGCAAGAGGCAATGATAAAGAGATGGCAACCTTGTCAAGTTTTTG AATTGGAGAGTGATCACAGCCCTTTTTTCTCTGCCCCATCTTTGCTTTTCGAAGTAATAGTCAAAGCAGCAGCCACCATCACTTGTAACTGA
AA sequence Show only first row Show all	>Potri.019G131100.1 pacid=42773674 polypeptide=Potri.019G131100.1.p locus=Potri.019G131100 ID=Potri.019G131100.1.v4.1 annot-version=v4.1 MNEEAGLQKPHFVLVHGACHGAWCWYKIRCLMETSGYKVTCLDLKSAGIDQSNPNTILTLDEYNAPLIDFLSNLPHDEKVILVGHSAGGLSLTDAIHRFP KRIHLAIYVAANMLKHGFSSDQDFKDGDPDVSEYGEIADLEYGMGLDEPPTSVIIKEEFRKRILYQMSPKEDSILASMLLRAGPVRAFKGARFEGGKDAD SVPRVYIKTLHDHILRPVQQEAMIKRWQPCQVFELESDHSPFFSAPSLLFEVIVKAAATITCN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G131100 [exp]	0	1
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.018G051800 [exp]	1.00	0.9506
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120160 [exp]	5.91	0.9297
AT1G11300			protein serine/threonine kinas...		Potri.004G027533 [exp]	6.16	0.9250
AT4G19160			unknown protein		Potri.001G193400 [exp]	16.52	0.9086
AT1G08530			unknown protein		Potri.019G030400 [exp]	17.08	0.8973
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.003G166200 [exp]	18.24	0.9358
AT1G16000			unknown protein		Potri.004G051201 [exp]	24.12	0.8884
					Potri.006G028101 [exp]	27.36	0.9050
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.011G021216 [exp]	29.06	0.9334
					Potri.010G007844 [exp]	33.31	0.9272

Compare expression of checked genes

Potri.019G131100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.