Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPT2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30520 821 / 0 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G67385 389 / 1e-128 Phototropic-responsive NPH3 family protein (.1) AT5G48800 362 / 5e-118 Phototropic-responsive NPH3 family protein (.1) AT2G47860 329 / 8e-105 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G08570 326 / 6e-104 Phototropic-responsive NPH3 family protein (.1) AT1G03010 326 / 1e-103 Phototropic-responsive NPH3 family protein (.1) AT3G08660 313 / 1e-99 Phototropic-responsive NPH3 family protein (.1) AT1G30440 316 / 2e-99 Phototropic-responsive NPH3 family protein (.1) AT5G13600 312 / 8e-99 Phototropic-responsive NPH3 family protein (.1) AT3G49970 289 / 1e-90 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159000 [exp] 1013 / 0 AT2G30520 846 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.007G053200 [exp] 441 / 2e-148 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 378 / 3e-124 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 346 / 1e-111 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 343 / 2e-110 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 343 / 5e-110 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 333 / 1e-106 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 323 / 3e-102 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 322 / 7e-102 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013057 [exp] 857 / 0 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10029102 [exp] 855 / 0 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10025928 [exp] 364 / 1e-118 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 352 / 1e-114 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 316 / 1e-99 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 311 / 2e-98 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 310 / 1e-97 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 310 / 3e-97 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 307 / 2e-96 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 306 / 6e-96 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.019G131600.1 pacid=42773121 polypeptide=Potri.019G131600.1.p locus=Potri.019G131600 ID=Potri.019G131600.1.v4.1 annot-version=v4.1 ATGGCTTCTCCTGTCAGAAGCAGGCTCTCTCTTGCCATGGAGAGAACTGGCAAATGGGTCTTTTCTAAAGATATTCCTACAGATGTTGTGGTTGTAGTGT GTGAAGCCAGCTTTTCTCTTCATAAGTTCATGCTACTGGCAAAGAGCAACTACATACGAAAACTAATTTTTGAATCAAAAGAACCAGAGCTAGCTAGGAT CGATCTGTCTGGCATACCTGGAGGGCCTGAGATCTTCGTAAAAGCAGCAAAATTCTGCTATGGTGTTAACTTTGAGATCACGGTTCAAAACGTAGCAGCC CTTCGTTGTGCTGCTGAGTATCTTCAAATGACTGATACGTATTGTGATAACAATCTTGCTGGTCGGACTGAAGATTTCTTTGCTCAAGTAGCCCTGTCTA GCCTTTCCGGCGCCATCATTGTGTTAAAATCCTGCGAAGATCTCCTTCCTCTGGCTGAAGACGTCAAAATTGTCCAAAGATGTGTCGATGCCATCAGCCT TAAGGCTTGTAATGAGGCAAACTTTCCAAGCAGAACACCACCAAATTGGTGGACTGAGGAGTTATCAATTTTAGACATAGAATTCATTGGCAGAATCCTG TCTGGAATGAGGAAACGCGCCGCGAAAGCACTAACCTTAGCAAGTGCTTTAATAACATACACAGAAAGAAATCTTCGAGATCTTGTTCGAGATCACTCCG GCAGGTGCACCAAGTCCTCCATTTCTGATGATTCTGGTATGTATGCCCGCGAACGCGAGCTTCTGCAATCAATAGTCTCTCTCTTGCCCTCGGAGAAAGC TACCTTGCCTATCAACTTCCTCTGCTGCCTTCTCCGTACTGCCATCTTTGTCAAGGCCTCAAATTCTTGCAAGAATGAGCTCGAGAAGCGAATCTCTGTG ATATTAGAGCATGTCACGGTTGATGATCTACTCGTCATGTCTTTCACTTATAATGGTGAGAAACTTTACGATCTGGATAGCATCAGGAGCATCATATCAG GATTCATGGAGAAGGAGAAGAATATGGCTGTCTTTAGTGGTGGTGATTTCGAGGAAACATGTTCTGCAGCAATGCATAGAGTCGCAAAAACTGTGGACTC GTACCTTGGTGAGATCGCAACCTATCCTGAACTCACCATTTCCAAATTCAATGGGATTGCAACTCTTGTGCGGAAAGGAGCCAGAAAGGTTGACGATGAT CTCTATCGTGCCATCGACATCTATCTGAAGGCTCATCCGAATCTCGATGAGATGGAACGAGAGAAGGTTTGCAGTGTCATGGATCCATTGAAACTCTCCT ATGAAGCTCGACTCCATGCTTCACAAAACAAAAGATTACCAGTACAGATTGTTTTGCATACCCTTTACTACGATCAGCTTAAACTTAGGAGTGGTGCAGA TGATCAGCCTGATGCTGCTGCAACAAGGAGTCAATTGCAATCTGATGTTTCACTTGTCAGTGAGAATGAGGCCTTGCGATCAGAGCTTACGAAGATGAAG CTTTACATCTCAGACATGCAGAAGGATAAAGGGAGTTCAGCTAAAAGTATTTCTGCTGCTGCTGCTACTACTTCTGGGCCTCGAAAACATACCTTCTTCT CATCCATGTCGAAGACCTTGGGGAAGTTGAATCCTTTCAAGCATGGATCTAAGGATACTTCTCATATCGATGACAATATTGCCGTGGATATTACCAAGCC CAGGAGGAGAAGGTTCTCCGTTTCTTAG
AA sequence Show only first row Show all	>Potri.019G131600.1 pacid=42773121 polypeptide=Potri.019G131600.1.p locus=Potri.019G131600 ID=Potri.019G131600.1.v4.1 annot-version=v4.1 MASPVRSRLSLAMERTGKWVFSKDIPTDVVVVVCEASFSLHKFMLLAKSNYIRKLIFESKEPELARIDLSGIPGGPEIFVKAAKFCYGVNFEITVQNVAA LRCAAEYLQMTDTYCDNNLAGRTEDFFAQVALSSLSGAIIVLKSCEDLLPLAEDVKIVQRCVDAISLKACNEANFPSRTPPNWWTEELSILDIEFIGRIL SGMRKRAAKALTLASALITYTERNLRDLVRDHSGRCTKSSISDDSGMYARERELLQSIVSLLPSEKATLPINFLCCLLRTAIFVKASNSCKNELEKRISV ILEHVTVDDLLVMSFTYNGEKLYDLDSIRSIISGFMEKEKNMAVFSGGDFEETCSAAMHRVAKTVDSYLGEIATYPELTISKFNGIATLVRKGARKVDDD LYRAIDIYLKAHPNLDEMEREKVCSVMDPLKLSYEARLHASQNKRLPVQIVLHTLYYDQLKLRSGADDQPDAAATRSQLQSDVSLVSENEALRSELTKMK LYISDMQKDKGSSAKSISAAAATTSGPRKHTFFSSMSKTLGKLNPFKHGSKDTSHIDDNIAVDITKPRRRRFSVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.019G131600 [exp]	0	1	RPT2.3
AT5G22390			Protein of unknown function (D...		Potri.009G162800 [exp]	5.65	0.8918
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.017G054800 [exp]	6.00	0.8535
AT2G30300			Major facilitator superfamily ...		Potri.013G154000 [exp]	10.48	0.9037
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.002G256300 [exp]	11.22	0.8932	Pt-SDD1.1
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152080 [exp]	11.61	0.9069
AT3G61930			unknown protein		Potri.014G105000 [exp]	14.83	0.9042
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139700 [exp]	19.79	0.8673	FLS4,Pt-FLS.4
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	21.63	0.7597
AT5G58200			Calcineurin-like metallo-phosp...		Potri.006G188200 [exp]	21.67	0.7312
AT5G42960			unknown protein		Potri.014G181000 [exp]	23.49	0.7813

Compare expression of checked genes

Potri.019G131600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.