Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06255 108 / 2e-31 ELF4-L3 ELF4-like 3 (.1) AT1G17455 103 / 1e-29 ELF4-L4 ELF4-like 4 (.1.2) AT1G72630 100 / 4e-28 ELF4-L2 ELF4-like 2 (.1) AT2G29950 65 / 2e-14 ELF4-L1 ELF4-like 1 (.1) AT2G40080 64 / 6e-14 ELF4 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G063900 [exp] 129 / 5e-40 AT1G17455 156 / 7e-51 ELF4-like 4 (.1.2) Potri.001G170100 [exp] 129 / 1e-39 AT1G17455 158 / 1e-51 ELF4-like 4 (.1.2) Potri.006G143800 [exp] 118 / 2e-35 AT1G17455 166 / 1e-54 ELF4-like 4 (.1.2) Potri.008G068200 [exp] 81 / 1e-20 AT2G40080 112 / 2e-33 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) Potri.001G251600 [exp] 73 / 1e-17 AT2G29950 109 / 6e-32 ELF4-like 1 (.1) Potri.009G046400 [exp] 65 / 2e-14 AT2G29950 99 / 6e-28 ELF4-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000408 [exp] 109 / 9e-32 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2) Lus10000371 [exp] 109 / 1e-31 AT1G17455 140 / 2e-44 ELF4-like 4 (.1.2) Lus10001250 [exp] 108 / 2e-31 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2) Lus10018237 [exp] 71 / 1e-16 AT2G29950 112 / 6e-33 ELF4-like 1 (.1) Lus10040667 [exp] 70 / 5e-16 AT2G29950 108 / 4e-31 ELF4-like 1 (.1) Lus10028288 [exp] 54 / 5e-10 AT2G40080 110 / 1e-32 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07011 [poplar] [flax] Elf4 Early Flowering 4 domain
Representative CDS sequence Show only first row Show all	>Potri.019G131700.2 pacid=42774672 polypeptide=Potri.019G131700.2.p locus=Potri.019G131700 ID=Potri.019G131700.2.v4.1 annot-version=v4.1 TTAAGCAATGGAAACCAAGTACATAGCAAGATTTTGCAAACATTCCAGAAGAGTTTTGTGCAAGTTGAGGACATTCTGGATCAAAACAGGTTACTAATCA ATGAAATAAACCAAAACCAGGAATCGAAGATCCCAGACAAATTGACTCGAGATGTTGGTTTGATCAAGGAGCTAAACATTAACATCAGAAGGGCGGTCGG TCTTTATGCTGATCTTTCCTGCAATTTCAATATCAGGTCAATGGAACCTTCATCAGAAGGTGAATCAAGTGGGATATCGAAGTCCAATTCCATGAGAACT AAATCCGGGAGGGTCGGCGCGCAAGAATGTTTGCTGCTGAAAATCAAAGCTGCTAATTCGCATGCTGTTATTATGCGATGA
AA sequence Show only first row Show all	>Potri.019G131700.2 pacid=42774672 polypeptide=Potri.019G131700.2.p locus=Potri.019G131700 ID=Potri.019G131700.2.v4.1 annot-version=v4.1 LSNGNQVHSKILQTFQKSFVQVEDILDQNRLLINEINQNQESKIPDKLTRDVGLIKELNINIRRAVGLYADLSCNFNIRSMEPSSEGESSGISKSNSMRT KSGRVGAQECLLLKIKAANSHAVIMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G06255		ELF4-L3	ELF4-like 3 (.1)		Potri.019G131700 [exp]	0	1
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.006G269800 [exp]	3.46	0.8743
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045100 [exp]	8.12	0.8414
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.012G129300 [exp]	9.16	0.8361
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.006G248800 [exp]	13.85	0.7905
					Potri.001G020080 [exp]	15.74	0.8342
					Potri.013G160350 [exp]	15.87	0.8066
AT5G46940			Plant invertase/pectin methyle...		Potri.005G023201 [exp]	16.58	0.8304
AT4G38160		PDE191	pigment defective 191, Mitocho...		Potri.009G170300 [exp]	24.61	0.7383
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G011000 [exp]	24.65	0.7187
AT4G02550			unknown protein		Potri.006G191850 [exp]	25.07	0.7714

Compare expression of checked genes

Potri.019G131700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.