Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL10.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26910 410 / 7e-148 RPL10B ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) AT1G14320 409 / 3e-147 RPL10A, RPL10, SAC52 SUPPRESSOR OF ACAULIS 52, ribosomal protein L10 A, ribosomal protein L10, Ribosomal protein L16p/L10e family protein (.1.2) AT1G66580 402 / 1e-144 RPL10C, SAG24 ribosomal protein L10 C, senescence associated gene 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159600 [exp] 449 / 5e-163 AT1G26910 411 / 3e-148 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Potri.013G159301 [exp] 234 / 2e-78 AT1G14320 222 / 2e-73 SUPPRESSOR OF ACAULIS 52, ribosomal protein L10 A, ribosomal protein L10, Ribosomal protein L16p/L10e family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012113 [exp] 226 / 2e-76 AT1G26910 209 / 3e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10010429 [exp] 226 / 2e-76 AT1G26910 209 / 3e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10031568 [exp] 226 / 3e-76 AT1G26910 209 / 5e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10015106 [exp] 226 / 3e-76 AT1G26910 209 / 5e-70 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10034092 [exp] 225 / 5e-76 AT1G26910 216 / 7e-73 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10031002 [exp] 224 / 8e-76 AT1G26910 206 / 5e-69 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10035401 [exp] 224 / 2e-75 AT1G26910 206 / 5e-69 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1) Lus10003055 [exp] 142 / 9e-44 AT1G26910 135 / 2e-41 ribosomal protein L10 B, Ribosomal protein L16p/L10e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00252 [poplar] [flax] Ribosomal_L16 Ribosomal protein L16p/L10e
Representative CDS sequence Show only first row Show all	>Potri.019G131900.1 pacid=42774172 polypeptide=Potri.019G131900.1.p locus=Potri.019G131900 ID=Potri.019G131900.1.v4.1 annot-version=v4.1 ATGGGTAGAAGACCTGCAAGGTGTTACCGCCAGATCAAGAATAAACCATACCCAAAATCACGATACTGCCGTGGTGTGCCTGACTCAAAGATCAGGATTT ATGATGTCGGGATGAAAAGGAAAGGAGTTGATGAGTTTCCATTCTGTGTGCACTTGGTGTCCTGGGAGAAGGAGAACGTCTCCAGTGAAGCTCTTGAAGC GGCACGTATTGCTTGCAACAAATACATGGCCAAGTTTGCTGGAAAAGATGCTTTCCATTTGAGAGTCAGGGTTCATCCTTTCCATGTCCTGCGAATCAAC AAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACCGGTATGAGAGGTGCTTTTGGTAAACCACAGGGCACTTGTGCTAGAGTCGCTATTGGACAGG TTCTTCTTTCTGTTCGTTGCAAGGACAGCAACAGTCACCATGCTCAGGAGGCTCTCCGCCGTGCAAAATTCAAGTTCCCTGGTCGCCAAAAGATTATTGT CAGCAGGAAGTGGGGTTTTACCAAGTTCAATCGCACTGATTATTTGAAGTTGAAGGCTGAGAATAAGGTCATGCCAGATGGTGTGAATGCCAAGCTTCTT GGATGCCATGGACCCTTGGCCAACCGTCAACCTGGAAGAGCATTCTTGCAAGAAACTGCCTAG
AA sequence Show only first row Show all	>Potri.019G131900.1 pacid=42774172 polypeptide=Potri.019G131900.1.p locus=Potri.019G131900 ID=Potri.019G131900.1.v4.1 annot-version=v4.1 MGRRPARCYRQIKNKPYPKSRYCRGVPDSKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRIN KMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKLKAENKVMPDGVNAKLL GCHGPLANRQPGRAFLQETA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Potri.019G131900 [exp]	0	1	Pt-RPL10.4
AT2G46290			Transducin/WD40 repeat-like su...		Potri.008G141400 [exp]	1.41	0.9649	Pt-TRIP.2
AT1G73230			Nascent polypeptide-associated...		Potri.012G037900 [exp]	5.29	0.9447
AT3G12390			Nascent polypeptide-associated...		Potri.001G034400 [exp]	7.61	0.9453
AT3G52580			Ribosomal protein S11 family p...		Potri.004G131800 [exp]	10.81	0.9452	Pt-RPS14.4
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.002G056200 [exp]	11.74	0.9371	Pt-RPS12.2
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Potri.001G370000 [exp]	11.83	0.9187
AT1G49410		TOM6	translocase of the outer mitoc...		Potri.004G149200 [exp]	12.00	0.9278	TOM6.1
AT3G56340			Ribosomal protein S26e family ...		Potri.013G093700 [exp]	12.40	0.9241	RPS26.1
AT5G45775			Ribosomal L5P family protein (...		Potri.011G068900 [exp]	13.78	0.9346	Pt-L16.1
AT4G36130			Ribosomal protein L2 family (....		Potri.005G115700 [exp]	15.65	0.9381	RPL2.2

Compare expression of checked genes

Potri.019G131900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.