Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01960 377 / 2e-128 RING/U-box superfamily protein (.1) AT1G65040 48 / 7e-06 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G16090 48 / 1e-05 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT3G43430 43 / 0.0001 RING/U-box superfamily protein (.1) AT1G18770 39 / 0.001 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G160000 [exp] 459 / 1e-160 AT5G01960 545 / 0.0 RING/U-box superfamily protein (.1) Potri.006G111800 [exp] 371 / 2e-125 AT5G01960 572 / 0.0 RING/U-box superfamily protein (.1) Potri.016G141200 [exp] 369 / 2e-124 AT5G01960 546 / 0.0 RING/U-box superfamily protein (.1) Potri.019G051500 [exp] 48 / 7e-06 AT3G16090 661 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.013G088400 [exp] 48 / 1e-05 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 45 / 5e-05 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 44 / 0.0001 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 42 / 0.0003 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000996 [exp] 372 / 3e-126 AT5G01960 626 / 0.0 RING/U-box superfamily protein (.1) Lus10011027 [exp] 369 / 1e-124 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10040359 [exp] 43 / 0.0004 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023477 [exp] 43 / 0.0004 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10037490 [exp] 42 / 0.0006 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10011390 [exp] 42 / 0.0006 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10023617 [exp] 42 / 0.0007 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G132201.1 pacid=42773526 polypeptide=Potri.019G132201.1.p locus=Potri.019G132201 ID=Potri.019G132201.1.v4.1 annot-version=v4.1 ATGGAGAGTTGTGGTGTAGGCAATTCTGGTGAAATCTATAGGAATTCTTCTTTAGGAAGCAGCAGTAATATTAGTAATGGTGGTGGTGATGCTGGTGGCG GTGGCGGTGGCGGCAACAATTCAAGAAGAGGAAACAACTCCAATTTTTCTCAAGAAAGGGAGCATTTGATTCCTTCTCCATCCACTGCTGCTGCTGGTGG TCGTCGTGGTGGTCACCAAGAGGTTACAATTAGGATAATCGGCTCTGCAGAGAATGATCGTGATGATGAATCCAATGCTTCTCCAAATGTAATCAATGTG AATTCTGTAAGCACTGTTTCTGATGGGTCTTCTGGGATTGACATAGATTCATCATTACCGTCGTCGTCGTCATCTTCTTATCAGAGATATGATATCCAGA ACTTAGCTAGGTGGATGGAGCACGTTCTTCCATTTTCTTTGCTGCTGCTGCTTGTTTTTGTCCGCCAACATTTGCAAGGCTTTGGCGTTGCATTGTGGAT TGCTGCATTCTTGTTTAAATCAAATTATATTTTAAGGAAGCAGACAGCCCTAAAGGGGGGGAGAGAGAAGTCTGTTCTCATAGGCATGACTTGGCATAGG AATGGTGACCTTCTATATCTATTGGTTTTACTTCTTCCAACCACAATACCTCCTTTATGGCATGCTGTGTTTATCGGCATTGTGAATGATGGTTTGGTGC GGGAGGTAGCAATGGTCTTCAAAATGCTTTTATTGTATTACAAGAATGGCAGAGGCCACAATTACCGTAAACAGGGTCAAATGCCAACTCTGGTGGAGTA TTTGCTGATATTGTATCGTGCCGTGTTGCCAACACCTGTTTGGTATCTTTTCTTTTTAAACAAAGAATATGGAAGCTTTTTTTCATCATTAATCACAGGG TTATATTTAACCGTCAAGCTTACAACAGTTCTATGGAAGGTTCAACTATTCTTTACTGCATGGCGGACCTTGCCACTTAAAGAAATGTACTATGGTTCTT TTGCCACATCTGAACAGGTCAAAGCAGTGGGAGATCTCTGTGCCATTTGCCAGGAGAAGACGCCCGAGCGCCCATTTCACTACGTTGTAAACACATTCTG TGAAGATTGTGTATCTGAATGGTTTGATCGAGAAAGGACTTGTCCATTATGCAGAGCATTGATCAAACCAGCAGATATTAAATCATACAGTGATGGATCA ACCAGTTTGTTTTTCCAGATATTCTAA
AA sequence Show only first row Show all	>Potri.019G132201.1 pacid=42773526 polypeptide=Potri.019G132201.1.p locus=Potri.019G132201 ID=Potri.019G132201.1.v4.1 annot-version=v4.1 MESCGVGNSGEIYRNSSLGSSSNISNGGGDAGGGGGGGNNSRRGNNSNFSQEREHLIPSPSTAAAGGRRGGHQEVTIRIIGSAENDRDDESNASPNVINV NSVSTVSDGSSGIDIDSSLPSSSSSSYQRYDIQNLARWMEHVLPFSLLLLLVFVRQHLQGFGVALWIAAFLFKSNYILRKQTALKGGREKSVLIGMTWHR NGDLLYLLVLLLPTTIPPLWHAVFIGIVNDGLVREVAMVFKMLLLYYKNGRGHNYRKQGQMPTLVEYLLILYRAVLPTPVWYLFFLNKEYGSFFSSLITG LYLTVKLTTVLWKVQLFFTAWRTLPLKEMYYGSFATSEQVKAVGDLCAICQEKTPERPFHYVVNTFCEDCVSEWFDRERTCPLCRALIKPADIKSYSDGS TSLFFQIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01960			RING/U-box superfamily protein...		Potri.019G132201 [exp]	0	1
AT2G47710			Adenine nucleotide alpha hydro...		Potri.008G221300 [exp]	11.18	0.8132
AT3G54870		AtKINUc, CAE1, ...	MORPHOGENESIS OF ROOT HAIR 2, ...		Potri.008G035400 [exp]	13.49	0.7552
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Potri.001G043200 [exp]	15.49	0.7802
					Potri.006G267450 [exp]	15.87	0.8015
AT5G07820			Plant calmodulin-binding prote...		Potri.012G067100 [exp]	21.63	0.8103
AT5G06270			unknown protein		Potri.009G161400 [exp]	23.66	0.7266
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	26.60	0.6594
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.001G170800 [exp]	28.19	0.7531
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Potri.002G049300 [exp]	31.62	0.7362
AT5G12470			Protein of unknown function (D...		Potri.001G256300 [exp]	33.58	0.7319

Compare expression of checked genes

Potri.019G132201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.