Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30530 252 / 1e-79 unknown protein AT5G01970 236 / 2e-73 unknown protein AT1G30050 178 / 6e-51 unknown protein AT4G02800 96 / 9e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G160100 [exp] 518 / 0 AT2G30530 266 / 8e-85 unknown protein Potri.016G141300 [exp] 258 / 1e-80 AT5G01970 353 / 2e-119 unknown protein Potri.006G111900 [exp] 256 / 1e-79 AT5G01970 352 / 2e-118 unknown protein Potri.002G053100 [exp] 88 / 7e-19 AT4G02800 276 / 3e-91 unknown protein Potri.005G209400 [exp] 87 / 2e-18 AT4G02800 291 / 3e-97 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031947 [exp] 323 / 4e-107 AT5G01970 263 / 1e-85 unknown protein Lus10035153 [exp] 323 / 5e-106 AT5G01970 264 / 8e-85 unknown protein Lus10019115 [exp] 286 / 7e-92 AT2G30530 267 / 5e-86 unknown protein Lus10034444 [exp] 283 / 2e-90 AT2G30530 268 / 3e-86 unknown protein Lus10035609 [exp] 122 / 1e-30 AT1G30050 187 / 5e-56 unknown protein Lus10003240 [exp] 104 / 2e-23 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10022037 [exp] 98 / 3e-22 AT4G02800 276 / 1e-91 unknown protein Lus10014668 [exp] 84 / 2e-17 AT4G02800 262 / 1e-85 unknown protein Lus10000658 [exp] 83 / 3e-17 AT4G02800 266 / 1e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G132300.1 pacid=42773123 polypeptide=Potri.019G132300.1.p locus=Potri.019G132300 ID=Potri.019G132300.1.v4.1 annot-version=v4.1 ATGGCATATAGAAGAAGGCAGCAGCAGGAGGAGGAGGAGACATCAAGCACAAGCAGCAGAAGCAGAGGCAGGCCATCTCCAATCAGGACGACAGCATCAT CTTCTTCTTTTTCATTGGACGAAGAGGATTGGATTTATGAAGATGCTGATTATAACAACAACAATAATATTAATATTGAGAATAAGAGTAATTCCACCTC TCTGGCTACCAAAGCCATTAGAGCTTCTTCCGCTGCCCACAGAGACTCCTCTCTCTCTTCTGCTTACGCCTTCACTAATCACCCCTCCCCCTCATCTAAT CCTTCCAGTTCTAATTCTTCTTCTACCAAGGAGGAGGAACCGAACAAGGCCTATTATCACGAGTACACATCTATGAAAACATTGAAAGAAACGCAGCAGC AGCAGCAAGGGTTTTGGGGTACTCTTGCTAGAAAAGCTAAATCCATTCTTGATGATGATTTCAATACTAGTACCTACAATGCTGCCACTTCTTCCTCTCC TCAAAAGCAACAAATGGATTCAGGTACTGACAGGACTACTACTTGGCAACACCATGTCCCCGACACCACAACTAAGTCCAAGTACCAGAACCCCTACCCC CCTCGTGAGACCCATGGGAAGATGGATAGTCCTGTATTACAAAAGGGACTCAACGCGATCTCATCTTCCCTGAATTATATTGGTAATGCTGTCGAGGAAG GTCTGACAAGAGTGGAGAACCGGACTGCAGACATTATCCAAGAAACTCGTAAGCATATTCAGAAAAAGCCTAATGGTGCTGCTGCACGGAATCAGGCAAC CTATAGGAGTAGCATGTGGCAACAACCTCAAATGGAGACCAGTCGACAACAACCCCAGAAAGAAACTGACCAAGAACTCCAACTGAAGGCATCTCGCGAC GTTGCAATGGCAATGGCTGCCAAGGCAAAGCTTCTTCTTCGAGAGTTGAAAACTGTTAAAGCGGATTTTGCTTTTGCTAAGGAGCGATGTGCTCAGCTGG AGGAGGAGAATAAAATTCTCAGGGAGAATCGTGAAAGGGGAGAGAACCTGGAAGATGATGATTTGATTCGGCTTCAACTTGAAACACTCTTAGCAGAGAA GGCCCGGTTGGCACATGAGAACTCGGTCTATGCTCGTGAGAACCGCTTTTTGAGGGAGGTTGTTGAATATCACCAGCTTACCATGCAGGATGTTGTGTAT TTGGATGAGGGCACTGAAGAAGTAACTGAAGTTTATCCCATCAAGGTTGTCTCCAACACTCCCTCCATCCCGTCAATGCCGCCCCCTCCTTTGCATACTG AGGCTTCCCTTGGTACAAGTCTGCCTGTGGCTCGAGACATCTTGCCTCATCCTGTCCCCCCGCCAGGGTCTGTGGAGGTTTCCAAAAGTGCTGCATCACC AAATTCATCTACCTCGACGTCAATTGCAGCAGATCCTAGAAAACACTCGAATCCTACTGTTTGA
AA sequence Show only first row Show all	>Potri.019G132300.1 pacid=42773123 polypeptide=Potri.019G132300.1.p locus=Potri.019G132300 ID=Potri.019G132300.1.v4.1 annot-version=v4.1 MAYRRRQQQEEEETSSTSSRSRGRPSPIRTTASSSSFSLDEEDWIYEDADYNNNNNINIENKSNSTSLATKAIRASSAAHRDSSLSSAYAFTNHPSPSSN PSSSNSSSTKEEEPNKAYYHEYTSMKTLKETQQQQQGFWGTLARKAKSILDDDFNTSTYNAATSSSPQKQQMDSGTDRTTTWQHHVPDTTTKSKYQNPYP PRETHGKMDSPVLQKGLNAISSSLNYIGNAVEEGLTRVENRTADIIQETRKHIQKKPNGAAARNQATYRSSMWQQPQMETSRQQPQKETDQELQLKASRD VAMAMAAKAKLLLRELKTVKADFAFAKERCAQLEEENKILRENRERGENLEDDDLIRLQLETLLAEKARLAHENSVYARENRFLREVVEYHQLTMQDVVY LDEGTEEVTEVYPIKVVSNTPSIPSMPPPPLHTEASLGTSLPVARDILPHPVPPPGSVEVSKSAASPNSSTSTSIAADPRKHSNPTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30530			unknown protein		Potri.019G132300 [exp]	0	1
AT3G22430			unknown protein		Potri.010G087400 [exp]	2.23	0.8842
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Potri.013G046900 [exp]	3.00	0.8544
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G154200 [exp]	7.07	0.8288
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	7.93	0.8257	Pt-MKP1.2
					Potri.017G152420 [exp]	8.71	0.8602
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243350 [exp]	14.69	0.7772
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	14.69	0.8251
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.001G190000 [exp]	15.36	0.8348	PAFA901
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.013G123100 [exp]	19.62	0.8171
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Potri.006G083500 [exp]	21.07	0.8267	Pt-TAFII58.1

Compare expression of checked genes

Potri.019G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.