Plant FIBer expression Database

Potri.019G132450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G132450.1 pacid=42774541 polypeptide=Potri.019G132450.1.p locus=Potri.019G132450 ID=Potri.019G132450.1.v4.1 annot-version=v4.1
ATGAACAGAATCTCCAGGCTGGTTGATAGCATTGACAGCCGCCATGGCATCAGCCGCCAAACCTTACTGCTTTCTATAATAGCCACGGCCTCTTCGTTAA
GGGCTGATCTGCACCTGAACGACGACACTTTGCCACCCACAATCTGCCCACTGGAGTTCGAGTTCCTACAAAACCATGCATATACCTGTTGGCTCAGATC
CATTGATGAAGGAGGCATCACAGTTATTATTGACAGTACCCTGATTAGGAAATCGTTCCTCGCCATCCACACTTCTCAACTGACAGAGACAATTAAGGAG
ACAACCTCAGCACACTTTCCCACTCAACTATTCAGCACCTCTCCCAACCATTTTCCGAACCCGCAAGACCCGCCCTTCGAGTGA
AA sequence
>Potri.019G132450.1 pacid=42774541 polypeptide=Potri.019G132450.1.p locus=Potri.019G132450 ID=Potri.019G132450.1.v4.1 annot-version=v4.1
MNRISRLVDSIDSRHGISRQTLLLSIIATASSLRADLHLNDDTLPPTICPLEFEFLQNHAYTCWLRSIDEGGITVIIDSTLIRKSFLAIHTSQLTETIKE
TTSAHFPTQLFSTSPNHFPNPQDPPFE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G132450
[exp]
0 1
AT5G20420 CHR42 chromatin remodeling 42 (.1) Potri.010G183766
[exp]
16.27 0.8096
Potri.006G242350
[exp]
19.07 0.7742
AT5G42400 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7... Potri.005G260100
[exp]
30.39 0.7472
AT2G39580 unknown protein Potri.008G052500
[exp]
30.46 0.7617
AT2G15900 Phox-associated domain;Phox-li... Potri.004G146600
[exp]
35.24 0.7513
AT4G00590 N-terminal nucleophile aminohy... Potri.014G080600
[exp]
35.32 0.7764
AT1G16540 ACI2, ABA3, SIR... SIRTINOL RESISTANT 3, LOW OSMO... Potri.007G066400
[exp]
35.88 0.7737 Pt-ABA3.1
AT5G64300 ATGCH, ATRIBA1,... RED FLUORESCENT IN DARKNESS 1,... Potri.005G071600
[exp]
36.12 0.7202
AT5G61460 SMC6B, ATRAD18,... STRUCTURAL MAINTENANCE OF CHRO... Potri.003G107700
[exp]
36.74 0.7503
AT1G70620 cyclin-related (.1.2.3) Potri.010G046000
[exp]
38.53 0.7682

Potri.019G132450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.