Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) AT1G76380 132 / 2e-32 DNA-binding bromodomain-containing protein (.1.2.3) AT5G55040 125 / 1e-29 DNA-binding bromodomain-containing protein (.1.2) AT5G46550 63 / 4e-10 DNA-binding bromodomain-containing protein (.1) AT3G01770 54 / 3e-07 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT1G32750 54 / 3e-07 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) AT1G73150 51 / 2e-06 GTE3 global transcription factor group E3 (.1) AT3G54610 51 / 2e-06 ATGCN5, HAG1, HAG01, HAC3, BGT, HAT1, GCN5 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) AT3G57980 50 / 3e-06 DNA-binding bromodomain-containing protein (.1) AT2G34900 49 / 4e-06 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G112000 [exp] 248 / 4e-72 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.016G141400 [exp] 231 / 5e-66 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.002G009100 [exp] 134 / 8e-33 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.004G206200 [exp] 129 / 5e-31 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.005G252200 [exp] 119 / 1e-27 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 118 / 2e-27 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.001G355300 [exp] 56 / 9e-08 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.011G077100 [exp] 55 / 1e-07 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) Potri.005G217400 [exp] 55 / 1e-07 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032629 [exp] 135 / 1e-32 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10022999 [exp] 127 / 7e-31 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10043121 [exp] 128 / 2e-30 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10001391 [exp] 125 / 4e-30 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10030739 [exp] 121 / 1e-28 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10013220 [exp] 120 / 4e-28 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10027579 [exp] 59 / 9e-09 AT1G32750 1622 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) Lus10008553 [exp] 59 / 1e-08 AT1G32750 1623 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) Lus10039630 [exp] 58 / 2e-08 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1) Lus10011989 [exp] 57 / 4e-08 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.019G132601.1 pacid=42773356 polypeptide=Potri.019G132601.1.p locus=Potri.019G132601 ID=Potri.019G132601.1.v4.1 annot-version=v4.1 ATGCTGAAAGAGGAGGGAACAGGTCAGATTTATGGGCTCGTGCATGGACAAACCAGAAGGAGTGCAAGAATATGGGCTTTGGAGGAGAAAGCACACCAAC TCTCCCTCCAAAGACGGACTCATAAGCCACCGCCATCACCATCAGCATTAGAAAGTAAAAAGAAAAGGAGGGGCCGCAAACGCAAAAGCCTCCTCCTATA CATGGGCGTTAATTCTGTTGCTCCCCCCATGAACCAGAAGGAAGACGGAAACCCAATAGATGGTGGTGCTTCAATAGAAACTGAGCAACCTGCAGATTCG TCATTGCAAGGAATGCCAAAGAAACAGACTCTGGAATTTATCGTTGACATCCTACAGAGGAGAGACACACAAGAGATATTTGCACAGCCAGTTGACCCTG ATGAGGTTGTTGGCTATTACGATATCATTAAAGAGGCAATGGATTTTGGAACCATAAGGGCTAAACTTCAAGAAGGGATGTATACAAGTCTGGATCAATT TCAGCGTGATGTGTTCCTCATATCCAGCAATGCAATGAAATTTAATTCATCGACAACTGTTTATTATTCAGAGGCCCGTGCTATAAGTGAACTCGCTCAG CGGGTCTTCAATTCTCTGAGAACTGAACCTGAGAAATTTGAGCTGGAGCACTCGAGGATGAGAAGACACCCAGCTCAGAAAGGCCATGGTGAAACTGGAA GTGTACTGAATAAGCTTGTTAAACTTGCTGGGTTCAGAGATGGTGCTTCACTCAACAGCACCTCTCTGAAGAGAGCTACCCGAACACACCCTGCTTCAAC ACGTCTAAATCCTCTCGTTGACCATACAAAAAATGAAATGCCTTCTGGCTCAAGAGATGGTAGAAATTTAGAATCCTCTGAAACTGCTAGGCGTATGACA TATATGCCTCAAACCTCCTCCATCAATGGCAAAGGGTCAATAATTTCTGAACTCTATAATACACCAAAAGTGCTTACCCCTATTCCAGATTCAAGTATCC GATACAAGGAAAGTCTCAAGCAATTCGTTAAAGATTTGGGACCGACAGCTCAAATGGTTGCTAATAAGAAACTAGGAAAACATCCAATTGAAACTCCAAA TTTCGCGTCCTGGATGCCCACCTCTTCTTGCAAGAAAACAGATCTGGTCCCTGTGTCATCTGCACTTAACAGGCCTGCTCGTCTGACTGGGGTTAATGAT GGCCGTATGCCTCGCAACAGTTTCAATTCTATCTCACCTGCTTCTTTTGAAGGAAAGATGGTCTTTCCCAGTGGAGGTGTGAATGGTTATAATACAAGAG AAATGATTCCTACTCCAAATTGTCTACAAGGGATCAGAGCTCACCCCAACTATGGTGGAAGCAATAACTCTGCTTTGATGGGAGAAAACGCCGCTGGCAC AAGCAAAAATACGGATGCTTGTGCTTCTTCGGAAGCAAAAATGAGGGGCACCAGCGGCAACATGAATCTTCTTATGGCAACTCTCATGCAAATTACTGCT TTTCAAAATCGAAATTCCCAAACACCATCGGGTTATTTCCCTCTTACTGGAATGTATCCTGCCCAGCCATCACAGCTCATCACTGAACCTCAGCCATGGC TAAACAACCATTCAGAACCGTTGTACTTGCCTTCCCTAAGTACAAAGCTTGCCTCTACAAGTCAGGCAGCAACCTCTTTGCCACAGTTTGATTTCCAATG TGCAAATGGAGAGGGGTCAAGCACTGGTGCTGCAAGTGTAGTTGAGCACAAGTATGGAACTAAACATCCTCAAGCCGTTCAACTTCAACCAGCTGAAAGG ATCCAACCTCCACCACCATGGGATCCACAAGCAGTATATAATAACCTTCCAATCATGCGAAAGATGGTTAGTGAGCAGCAGATTCCATCACGACAGAATG CATTGATCAGGAAACAACAATCACAGGTTGCATCAATGCAACCAATGCCAGTCTGGCACAACAAACTTTGTTGA
AA sequence Show only first row Show all	>Potri.019G132601.1 pacid=42773356 polypeptide=Potri.019G132601.1.p locus=Potri.019G132601 ID=Potri.019G132601.1.v4.1 annot-version=v4.1 MLKEEGTGQIYGLVHGQTRRSARIWALEEKAHQLSLQRRTHKPPPSPSALESKKKRRGRKRKSLLLYMGVNSVAPPMNQKEDGNPIDGGASIETEQPADS SLQGMPKKQTLEFIVDILQRRDTQEIFAQPVDPDEVVGYYDIIKEAMDFGTIRAKLQEGMYTSLDQFQRDVFLISSNAMKFNSSTTVYYSEARAISELAQ RVFNSLRTEPEKFELEHSRMRRHPAQKGHGETGSVLNKLVKLAGFRDGASLNSTSLKRATRTHPASTRLNPLVDHTKNEMPSGSRDGRNLESSETARRMT YMPQTSSINGKGSIISELYNTPKVLTPIPDSSIRYKESLKQFVKDLGPTAQMVANKKLGKHPIETPNFASWMPTSSCKKTDLVPVSSALNRPARLTGVND GRMPRNSFNSISPASFEGKMVFPSGGVNGYNTREMIPTPNCLQGIRAHPNYGGSNNSALMGENAAGTSKNTDACASSEAKMRGTSGNMNLLMATLMQITA FQNRNSQTPSGYFPLTGMYPAQPSQLITEPQPWLNNHSEPLYLPSLSTKLASTSQAATSLPQFDFQCANGEGSSTGAASVVEHKYGTKHPQAVQLQPAER IQPPPPWDPQAVYNNLPIMRKMVSEQQIPSRQNALIRKQQSQVASMQPMPVWHNKLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20670			DNA-binding bromodomain-contai...		Potri.019G132601 [exp]	0	1
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014401 [exp]	1.00	0.9310
					Potri.005G162201 [exp]	2.82	0.9084
AT1G26660			Prefoldin chaperone subunit fa...		Potri.010G163600 [exp]	4.00	0.8955
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	4.24	0.9012
					Potri.006G169550 [exp]	4.47	0.8747
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.009G036450 [exp]	5.47	0.8845
					Potri.006G267450 [exp]	5.47	0.8941
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G099000 [exp]	7.00	0.8822
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111800 [exp]	7.48	0.8556
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Potri.003G169000 [exp]	7.87	0.7985

Compare expression of checked genes

Potri.019G132601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.