Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-STA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58270 1002 / 0 ABCB25, ATATM3, STA1 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) AT4G28630 882 / 0 ABCB23, ATATM1, ATM1 ATP-binding cassette B23, ABC transporter of the mitochondrion 1 (.1) AT4G28620 863 / 0 ABCB24, ATATM2, ATM2 ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 2, ATP-binding cassette B24, ABC transporter of the mitochondrion 2 (.1) AT1G10680 228 / 1e-62 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G70610 218 / 5e-61 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT3G28380 219 / 1e-59 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT5G39040 213 / 2e-59 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT2G36910 218 / 3e-59 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 218 / 6e-59 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G27940 217 / 1e-58 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G160500 [exp] 1155 / 0 AT5G58270 1048 / 0.0 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1) Potri.015G059700 [exp] 242 / 6e-70 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059800 [exp] 236 / 6e-68 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 233 / 1e-66 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G081100 [exp] 222 / 2e-60 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.018G141300 [exp] 219 / 2e-59 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.002G019600 [exp] 219 / 2e-59 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.011G133800 [exp] 218 / 3e-59 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G139600 [exp] 217 / 7e-59 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007987 [exp] 229 / 2e-65 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10032911 [exp] 231 / 1e-63 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017270 [exp] 231 / 2e-63 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10021145 [exp] 224 / 3e-63 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10015595 [exp] 228 / 2e-62 AT3G28860 971 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10000910 [exp] 223 / 3e-61 AT4G25960 808 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10004571 [exp] 222 / 2e-60 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10017271 [exp] 222 / 2e-60 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10036616 [exp] 209 / 4e-60 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005249 [exp] 218 / 4e-59 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.019G132800.4 pacid=42774435 polypeptide=Potri.019G132800.4.p locus=Potri.019G132800 ID=Potri.019G132800.4.v4.1 annot-version=v4.1 ATGTTAGTGACGGCGACGGCGGCAACAGTGGCTTCGGCATCTAATAAGTGCTTTAGGGCTCATAACAACCTCCACCTCCTTCGCCATCACCACTCTAATT ATTACAAATACAAGAATAATAATAAAAATCCTCTCTTATTTCTATGCTGCTTCAACCATTCCCTCCCCAATCATCATCACACCCGAAGATGCCGCCTTCT TCTTGGGCCGAGCAGCACCGACAGCAGCACTGCTCTTCACGCCAGTTTCCCCTTCCTATCCAACACATCATACTCCACTCCTCCCTCATGGAATCCCAAT GCTTTCCTTTCCAGTTCCTCCTCCTCCTCGACTCCTTTCCGGCCACCGAACTCAATGCTCAATGGCCACGCTTTCTTCTCAACCTCAGCTCCAAAGGATA AAGACGATGATGATGCTGCCAATAAAGCTTCATCATCACCATCGATTACGACTCCTGCTATTGCTGATAAATCAGACCAGCAACTTGCTGACATGAAAAT CTTACGGACTCTGGCCAGTTATTTATGGATGAAAGATAACCCTGAATTTCGCTTAAGGGTGCTTCTGGCCCTTGGTTTCCTTTTGGTTGCTAAGGTTTTG AATGTTCAAGTCCCTTTTCTTTTTAAGCTGGCTGTCGATTGGTTGACTGTTGCTACAGGCAATGCTACTGCTCTTGCTTCTTTCACCGCTGCTAATTCCA CTTTCCTTGCTCTCTTTGCTACCCCTGCTTCTGTTCTCATTGGTTATGGCATTGCGCGCTGTGGATCCTCTGCTTTCAATGAATTGAGGACTGCTGTGTT CTCTAAAGTAGCTCTGAGGACAATCCGAACTGTGTCTGGGAAGGTTTTTTCACATTTGCATGAGCTTGACCTCCGTTTTCATCTTAGTCGAGAAACTGGC GGGTTAAGTAGAATAATTGATCGTGGTAGCCGAGCAATAAACTTCATCCTCTCATCTATGGTATTCAATGTTGTACCAACCATTCTAGAGATATCTATGG TTTCAAGTATACTGGCATACAAATTTGGAGCCCCTTTTGCATTGATCACTTCACTCTCAGTCGCTGCATATGTTACTTTCACATTGTCTGTGACACAGTG GAGAACCAATTTCAGGAAGGCCATGAATAAAGCTGATAATGATGCTAGTACAAAGGCAATTGATTCCCTTATCAATTATGAGACTGTCAAATATTTCAAC AATGAAGCTTATGAAGCTGAGCAATATGATGAGTACTTAAAGAGGTATGAAGATGCTGCCTTAAAAACATCGCAAAGTCTTGCTTTTTTGAATTTTGGCC AAAATGTGATTTTTAGCACAGCTCTGTCAACAGCTATGGTTTTATGTTCACATGGAATTATGAATGGCCAGATGACTGTTGGTGATTTGGTTATGGTAAA TGGACTACTCTTCCAGCTCTCCCTTCCACTTAATTTCCTTGGCAGTGTTTACCGTGAGACAATACAGAGTCTTGTTGACATGAAGTCAATGTTTCACTTA CTCGAGGAGAAACCTGATATTAGAGATAAAGATGATGCCAAACCTCTAATGTTAAAGGGAGGTGGCATTCAATTTGACAATGTACACTTCAGCTACTTGG AAGAAAGAAAAATTCTTGATGGTGTAACTTTTTCTGTACCAGCTGGAAAAAGTGTGGCTATTGTTGGAACAAGTGGTAGTGGCAAGTCAACCATTCTTAG ATTACTCTTCAGGCTTTTCGACACTATTTCTGGAAGTATACAAATTGATGGTCAAGATACAAGGGATGTAACACTGGATAGTTTGCGGAGGTCTATTGGT GTTGTCCCACAAGACACAGTACTTTTCAATGACACAATATTTCACAACATTCATTATGGTCGTCTTTCAGCAACGAGAGAGGAAGTCTATGATGCTGCCC GACATGCTGCAATCCATGACACTGTCATGAACTTCCCTGAAAAATATTCTACAATAGTAGGAGAACGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAGCG TGTGGCTTTGGCCCGTGCATTTTTGAAAGCCGCTCCTATCATGCTATGTGATGAAGCTACAAGTGCTCTTGACAGCACCACTGAAGCAGAGATTCTAAAT GCATTGAAATCATTATCCAGCAATCGAACTTCAGTTTTCATTGCCCATAGGCTTACAACTGCCATGCAGTGTGATGAGATAATAGTTCTGGAGAATGGTA AAGTGGTTGAACAGGGACCCCATGAAGTTCTATTGACCAAGGCAGGTAGATACGCGCAGCTCTGGGCACAGCAAAATAGCACAGTGGATGCCCTTGATTC AGCCATTAAATTGGAGGCATAG
AA sequence Show only first row Show all	>Potri.019G132800.4 pacid=42774435 polypeptide=Potri.019G132800.4.p locus=Potri.019G132800 ID=Potri.019G132800.4.v4.1 annot-version=v4.1 MLVTATAATVASASNKCFRAHNNLHLLRHHHSNYYKYKNNNKNPLLFLCCFNHSLPNHHHTRRCRLLLGPSSTDSSTALHASFPFLSNTSYSTPPSWNPN AFLSSSSSSSTPFRPPNSMLNGHAFFSTSAPKDKDDDDAANKASSSPSITTPAIADKSDQQLADMKILRTLASYLWMKDNPEFRLRVLLALGFLLVAKVL NVQVPFLFKLAVDWLTVATGNATALASFTAANSTFLALFATPASVLIGYGIARCGSSAFNELRTAVFSKVALRTIRTVSGKVFSHLHELDLRFHLSRETG GLSRIIDRGSRAINFILSSMVFNVVPTILEISMVSSILAYKFGAPFALITSLSVAAYVTFTLSVTQWRTNFRKAMNKADNDASTKAIDSLINYETVKYFN NEAYEAEQYDEYLKRYEDAALKTSQSLAFLNFGQNVIFSTALSTAMVLCSHGIMNGQMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFHL LEEKPDIRDKDDAKPLMLKGGGIQFDNVHFSYLEERKILDGVTFSVPAGKSVAIVGTSGSGKSTILRLLFRLFDTISGSIQIDGQDTRDVTLDSLRRSIG VVPQDTVLFNDTIFHNIHYGRLSATREEVYDAARHAAIHDTVMNFPEKYSTIVGERGLKLSGGEKQRVALARAFLKAAPIMLCDEATSALDSTTEAEILN ALKSLSSNRTSVFIAHRLTTAMQCDEIIVLENGKVVEQGPHEVLLTKAGRYAQLWAQQNSTVDALDSAIKLEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Potri.019G132800 [exp]	0	1	Pt-STA1.1
AT5G12890			UDP-Glycosyltransferase superf...		Potri.001G016300 [exp]	5.83	0.9108
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	7.07	0.9161
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Potri.004G163600 [exp]	13.03	0.8919
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	14.89	0.8762
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	15.42	0.8776
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	19.07	0.8891
AT1G36320			unknown protein		Potri.005G170400 [exp]	20.12	0.9035
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.010G092900 [exp]	20.19	0.8994
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Potri.012G056100 [exp]	23.06	0.9026
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	24.89	0.9046

Compare expression of checked genes

Potri.019G132800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.