Plant FIBer expression Database

Potri.019G133000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51340 975 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019124
[exp]
1082 / 0 AT5G51340 859 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF10345 Cohesin_load Cohesin loading factor
Representative CDS sequence
>Potri.019G133000.1 pacid=42774068 polypeptide=Potri.019G133000.1.p locus=Potri.019G133000 ID=Potri.019G133000.1.v4.1 annot-version=v4.1
ATGGAAGCAGTAGCAGAGGGACTATGGGGATTAGCAGATTACGCGGAGAAGAAAGGAGAGATAGGAAAAGCAGTGAAATGCCTTGAAGCCATCTGTCAGA
GCCACGCGTCTTTCTTACCGATCGTGGAGGTGAAAACCCGTCTCCGCATCTCAACTCTACTGCTGAAGCACTCTCACAACGTGAATCAAGCAAAATCCCA
TCTGGAACGCTCCCAACTTCTTCTCAAACAGATTCCTTCTTGCTTCGACTTAAAATTCCGTACTTTCAGCATGTTAAGTCAGTGTTATCATCTCGTTGGA
GCTATTCCTCCTCAAAAACAAACCCTCCTTAAAGCTCTCGACCTCACAGCTTCCCTTCCTCCCGAGGTTTCGGTGAGGTTATGGGCTTGCAATTTCAATT
CTCAGCTGGCTAATGCTTTGATTATTGAAGGAGATTATCATTCTGCTTTCTCTGCTTTGGAATCTGGCTTTGATTCTGCTTCTCAATTATGTTATCCCGA
GTTACAGATGTTTTTTGCAACTTCGGTACTGCACGTGCATCTGATGCAATGGTACGATGATAATTCAGTTCAGTCTGCTCTTCGTAGATGCGACGACCTT
TGGGAATCATTAGGCCCTGATAGAAGGGAACACTGCCTTGGTTTGCTTTTTTACAATGAGCTACTTCACATATTTTATCAACTTCGTGTCTGCGACTACA
AGAATGCCAACCAGCACGTGGACAAGTTGGATGCTGCTATGAAGGCTGACTCGCACAAAATGCGGGAAGCACAGAGACTAACCAATGAACTCAATGCTTT
AAATCAAAGTCTTTCCAGGCCTGACTTACCCAACAGAGAGAGGTCCTTACTGTCTTCAAAGCAAGCTCAAATTCAAGATCGTATCTCAAGTATGAACAAC
ACGAATTGGTCCGCTGAACAACCTCTGGAACCTGCATATTTTGGAAATACTAAACGGCCATGGCAAGAGAAGCTTGTGTTGGCACCACCTCCCATTGATG
GAGAATGGTTGCCAAAAAGTGCTGTCTATGCTCTGGTTGATCTTATGGTGGTCATATTTGGTCGACCAAGAGGACTTTTTAAGGAGTGTGCAAAGCGGAT
TCAATCTGGGATGCGTGCTATTCAAGTGGAGTTGGTGAAGCTTGGAATAACTGATGGTGTTAGAGAAGTGGATTTGCAGCACTCTGCCATTTGGATGGCT
GGTGTGTATCTAATGCTTTTAATGCAGTTCCTTGAAAACAAAGTTGCCGTGGAACTCACAAGATCTGAATTTGTTGAAGCACAAGAGGCATTGGTGCAAA
TGAAAGAGTGGTTCATTCGCTTTCCAACAATTTTACAGGCCTGTGAGAGTATAATTGAGATGCTACGAGGGCAGTATGCTCATTCTGTTGGCTGTTATAG
TGAAGCAGCTTTTCATTACATTGAAGCTGCAAAGCTAACAGGGAGCAAGTCAATGCAAGCTATGTGCCAAGTTTATGCAGCTGTCTCTTACATCTGCATT
GGTGATGCTGAATCATCATCACAGGCACTTGATTTGATTGGACCAATTTACAGAATGAAGGATTCTTTTGTAGGAGTTCGAGAGCAAGCAAGTGTTCTTT
TTGCTTATGGCCTTTTATTGATGAGGCAGGACGAATATGAGGAAGCACGAGCTCGGCTGGCCAAGGGCCTGCAGATTGCTCATAATAGTATGGGTAACCT
TCAACTCATTGCACAGTATTTGACAATCCTTGGACATTTGGCTCTTGCTTTGCATGATACTGTACAAGCCCGAGAGATCTTGAGATCTTCCCTTACGCTG
GCAAAGAAGCTTTATGATATCCCAACTCAGATCTGGGTGCTGTCGGTTCTGACAGGTTTGTATAAAGGATTAGGAGAGATTGGGAATGAAATGGAGAATG
AGGAATATCGAAAGAAAAAGTTAGATGATCTGCAAACAAAACTTGCTGATGCACATTCATCCATTCACCACATTGAACTGATCGACAAGGTAAGAATTGA
AGTTCAACAGTTTCATGAACTTGATATCAAGCGTGCTATGGAAAGCCAGTCCATGGGAGTCAACCTCGACATTCCAGAGTCTGTTGGTTTATCAACTCCA
ATGCCAGCTTCTTCATCATCAAGGCTACTAGATTTGGATAATCTGGACAGTCGAAGGCGTGGGAAGAGAAAAATTTAG
AA sequence
>Potri.019G133000.1 pacid=42774068 polypeptide=Potri.019G133000.1.p locus=Potri.019G133000 ID=Potri.019G133000.1.v4.1 annot-version=v4.1
MEAVAEGLWGLADYAEKKGEIGKAVKCLEAICQSHASFLPIVEVKTRLRISTLLLKHSHNVNQAKSHLERSQLLLKQIPSCFDLKFRTFSMLSQCYHLVG
AIPPQKQTLLKALDLTASLPPEVSVRLWACNFNSQLANALIIEGDYHSAFSALESGFDSASQLCYPELQMFFATSVLHVHLMQWYDDNSVQSALRRCDDL
WESLGPDRREHCLGLLFYNELLHIFYQLRVCDYKNANQHVDKLDAAMKADSHKMREAQRLTNELNALNQSLSRPDLPNRERSLLSSKQAQIQDRISSMNN
TNWSAEQPLEPAYFGNTKRPWQEKLVLAPPPIDGEWLPKSAVYALVDLMVVIFGRPRGLFKECAKRIQSGMRAIQVELVKLGITDGVREVDLQHSAIWMA
GVYLMLLMQFLENKVAVELTRSEFVEAQEALVQMKEWFIRFPTILQACESIIEMLRGQYAHSVGCYSEAAFHYIEAAKLTGSKSMQAMCQVYAAVSYICI
GDAESSSQALDLIGPIYRMKDSFVGVREQASVLFAYGLLLMRQDEYEEARARLAKGLQIAHNSMGNLQLIAQYLTILGHLALALHDTVQAREILRSSLTL
AKKLYDIPTQIWVLSVLTGLYKGLGEIGNEMENEEYRKKKLDDLQTKLADAHSSIHHIELIDKVRIEVQQFHELDIKRAMESQSMGVNLDIPESVGLSTP
MPASSSSRLLDLDNLDSRRRGKRKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51340 Tetratricopeptide repeat (TPR)... Potri.019G133000
[exp]
0 1
AT1G55250 HUB2, HISTONEMO... histone mono-ubiquitination 2 ... Potri.001G008800
[exp]
4.79 0.8107
AT2G27110 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.... Potri.008G011800
[exp]
10.58 0.8065
AT3G18640 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.007G107800
[exp]
20.34 0.7973
AT1G64140 unknown protein Potri.001G097200
[exp]
23.68 0.7800
AT3G47570 Leucine-rich repeat protein ki... Potri.013G020900
[exp]
23.95 0.7746 Pt-RGA.59
AT3G18620 DHHC-type zinc finger family p... Potri.007G070600
[exp]
25.21 0.7193
AT4G32551 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimeri... Potri.006G248100
[exp]
28.77 0.7879 LUG.1
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G038400
[exp]
29.08 0.7807
AT4G21710 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-dir... Potri.004G043200
[exp]
31.14 0.7869
AT3G62010 unknown protein Potri.002G184400
[exp]
34.64 0.7842

Potri.019G133000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.