Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09575 317 / 4e-108 Protein of unknown function (DUF607) (.1) AT1G57610 306 / 1e-103 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) AT2G23790 157 / 5e-45 Protein of unknown function (DUF607) (.1) AT4G36820 153 / 1e-43 Protein of unknown function (DUF607) (.1) AT5G42610 144 / 8e-41 Protein of unknown function (DUF607) (.1) AT5G66650 144 / 2e-40 Protein of unknown function (DUF607) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161300 [exp] 479 / 1e-171 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 142 / 1e-39 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.007G031400 [exp] 142 / 2e-39 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.002G133400 [exp] 142 / 3e-39 AT2G23790 290 / 1e-96 Protein of unknown function (DUF607) (.1) Potri.014G041000 [exp] 137 / 3e-37 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034435 [exp] 380 / 5e-132 AT1G57610 335 / 6e-115 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10019127 [exp] 270 / 1e-89 AT1G57610 229 / 2e-75 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10016799 [exp] 175 / 9e-52 AT2G23790 362 / 1e-124 Protein of unknown function (DUF607) (.1) Lus10022496 [exp] 171 / 3e-50 AT2G23790 371 / 2e-128 Protein of unknown function (DUF607) (.1) Lus10000580 [exp] 157 / 3e-45 AT2G23790 314 / 1e-106 Protein of unknown function (DUF607) (.1) Lus10019663 [exp] 156 / 4e-45 AT2G23790 313 / 4e-106 Protein of unknown function (DUF607) (.1) Lus10010793 [exp] 135 / 8e-37 AT5G42610 270 / 2e-89 Protein of unknown function (DUF607) (.1) Lus10016305 [exp] 130 / 5e-35 AT2G23790 264 / 1e-86 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [poplar] [flax] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Potri.019G133400.1 pacid=42774225 polypeptide=Potri.019G133400.1.p locus=Potri.019G133400 ID=Potri.019G133400.1.v4.1 annot-version=v4.1 ATGTGGAGCAGATTATGGTCCTCCTCTGCCTCTGGGGTTTTGAAGCGCACCCTATTGGCGGCCAACACTAAATCCCTTTCAACATCACCGCGATGCGTCA CCAGGACTATTGCTTCCTCTGCCTATTCCTTTTGTTTTTCTGGTAGAGGAGGAGCTGCTGCTGCAACACCATTTTGCAGCAAAATCACATCCTTTTGTTT TTCTTCCATGATCGATGCTGATGCTAATGATAATGATTCTTCACCCTCCTCTAATAATAGTAACAGTGATAGTAATAAAAATGTTTTGATAACATGTGCG GAGGCGAAGAGGCTGATGAGACTGGTGAATGTGGAGGCTCTAAAGATGAAGCTTGGCATGGAAACCAAGGAAATTATACCATACTCAGACCTCCTTGAAG CCTGCCAAAGCATGGGTATTGCCAGATCTTATGATGAAGCCGTTACTTTTGCTCGTGTCCTTGACGATGCTGGTGTCGTCTTTCTCTTCGGTGACAAAGT CTATCTTCATCCTGATAAGGTGGTATATCTGATTAGAAGAGCAGTGCCGCTTGCTCTAACTCCTGAGGACGACCCTGCAAGAGAGGAGCTAAAGATACTT CAGGGGAAGAAAGAAGAAATTGATGTGCTGGCAAATAAGCAGGTTCGCCGCATCCTTTATAGTGGGTTGTGTTTAGCTTTATTACAGGTTGGGCTGTTTT TCCGGCTAACATTTTGGGAATTTTCATGGGATGTAATGGAACCTATAGCTTTTTTTGGCACAACCGGTAGCATAGTCATAGGTTATGCATACTTCCTGAT CACTGCAAGAGATCCAACTTACCAAGACCTGATGAAGAGGCTATTTCTCTCAAGGCAAAGGAAGTTGTTCAAGAAGCTGAATTTTGATGTTGAGAGATAT AAGGAGCTACAACTTAAATTGAAATCACCTCCGGATGCCACTGCCTCTATTAAAAAACGTGCAGGGATGGAACTGGAACTGGATGATGCAATACACAAGC AATAA
AA sequence Show only first row Show all	>Potri.019G133400.1 pacid=42774225 polypeptide=Potri.019G133400.1.p locus=Potri.019G133400 ID=Potri.019G133400.1.v4.1 annot-version=v4.1 MWSRLWSSSASGVLKRTLLAANTKSLSTSPRCVTRTIASSAYSFCFSGRGGAAAATPFCSKITSFCFSSMIDADANDNDSSPSSNNSNSDSNKNVLITCA EAKRLMRLVNVEALKMKLGMETKEIIPYSDLLEACQSMGIARSYDEAVTFARVLDDAGVVFLFGDKVYLHPDKVVYLIRRAVPLALTPEDDPAREELKIL QGKKEEIDVLANKQVRRILYSGLCLALLQVGLFFRLTFWEFSWDVMEPIAFFGTTGSIVIGYAYFLITARDPTYQDLMKRLFLSRQRKLFKKLNFDVERY KELQLKLKSPPDATASIKKRAGMELELDDAIHKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09575			Protein of unknown function (D...		Potri.019G133400 [exp]	0	1
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.015G072100 [exp]	10.90	0.8575
AT2G40370		LAC5	laccase 5 (.1)		Potri.010G183600 [exp]	17.97	0.8015
AT2G40435			unknown protein		Potri.006G106900 [exp]	21.90	0.8158
AT2G40020			Nucleolar histone methyltransf...		Potri.010G190800 [exp]	22.71	0.7551
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.001G302100 [exp]	25.49	0.8248
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	27.27	0.8045
AT1G54530			Calcium-binding EF hand family...		Potri.005G049900 [exp]	31.17	0.8013
AT1G77280			Protein kinase protein with ad...		Potri.005G182800 [exp]	41.91	0.8194
AT4G18060			SH3 domain-containing protein ...		Potri.001G354700 [exp]	46.26	0.8105
AT2G12400			unknown protein		Potri.018G120200 [exp]	47.62	0.7862

Compare expression of checked genes

Potri.019G133400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.