Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56380 183 / 3e-60 ARR17 response regulator 17 (.1) AT2G40670 176 / 2e-57 ARR16 response regulator 16 (.1.2) AT1G74890 170 / 2e-54 ARR15 response regulator 15 (.1) AT2G41310 167 / 4e-53 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT1G10470 168 / 6e-53 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT1G19050 166 / 7e-53 ARR7 response regulator 7 (.1) AT1G59940 167 / 1e-52 ARR3 response regulator 3 (.1) AT3G48100 165 / 1e-52 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) AT3G57040 164 / 2e-51 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT5G62920 162 / 2e-51 ARR6 response regulator 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G058900 [exp] 196 / 3e-65 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.015G070000 [exp] 170 / 4e-54 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Potri.003G197466 [exp] 167 / 2e-53 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.T124806 [exp] 166 / 5e-53 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.001G027000 [exp] 164 / 5e-52 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.016G038000 [exp] 161 / 1e-50 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.010G037800 [exp] 157 / 1e-48 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.006G041100 [exp] 155 / 2e-48 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.002G082200 [exp] 152 / 7e-47 AT3G57040 180 / 1e-56 RESPONSE REGULATOR 4, response regulator 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004243 [exp] 165 / 2e-52 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10042153 [exp] 164 / 1e-51 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10039524 [exp] 162 / 4e-51 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10016334 [exp] 156 / 1e-48 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10002750 [exp] 156 / 2e-48 AT3G57040 212 / 4e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10029211 [exp] 151 / 3e-46 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030664 [exp] 143 / 8e-43 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030822 [exp] 142 / 2e-42 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10029027 [exp] 115 / 8e-34 AT3G56380 121 / 4e-36 response regulator 17 (.1) Lus10007885 [exp] 117 / 2e-33 AT2G41310 143 / 1e-42 RESPONSE REGULATOR 8, response regulator 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Potri.019G133600.4 pacid=42774602 polypeptide=Potri.019G133600.4.p locus=Potri.019G133600 ID=Potri.019G133600.4.v4.1 annot-version=v4.1 ATGGCCAGCTCTTCTTCTTCCTTACCATCAATGGAGTTTGATTTTGATGAGAAACCACATGTGTTAGCTGTTGATGATAGTTTGATAGATCGCAAAGTCA TTGAAAGGTTACTTATCAACTCTACATGCAGAGTGACCACAGCAGAAAACGGAAAGAGAGCATTGGAGTATTTGGGCTTAGCTGATGGACAACATCCCAG CCATAGTGATTTGAAGGTGAATATGATCATCACCGATTATAGTATGCCAGGAATGACAGGTTATGAGCTGTTGAAAAGAATTAAGGAATCACCTACCATG AAGGAGATACCGGTGGTTGTAGTGTCATCTGAGAACATCCCTACACGAATTAATCAGTGCATGGAGGGAGGAGCTCAAGAATTCTTGCTGAAGCCTCTTC AGCTATCAGATGCGACAAAGCTGAGGTGCCATATAAAAAAGCTGAATAATTAA
AA sequence Show only first row Show all	>Potri.019G133600.4 pacid=42774602 polypeptide=Potri.019G133600.4.p locus=Potri.019G133600 ID=Potri.019G133600.4.v4.1 annot-version=v4.1 MASSSSSLPSMEFDFDEKPHVLAVDDSLIDRKVIERLLINSTCRVTTAENGKRALEYLGLADGQHPSHSDLKVNMIITDYSMPGMTGYELLKRIKESPTM KEIPVVVVSSENIPTRINQCMEGGAQEFLLKPLQLSDATKLRCHIKKLNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56380		ARR17	response regulator 17 (.1)		Potri.019G133600 [exp]	0	1
					Potri.006G183466 [exp]	2.82	0.8371
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	4.00	0.8371
AT1G03020			Thioredoxin superfamily protei...		Potri.014G133800 [exp]	4.69	0.6077
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	5.19	0.7837
					Potri.010G039851 [exp]	5.65	0.6563
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100800 [exp]	6.70	0.7683
AT5G18600			Thioredoxin superfamily protei...		Potri.010G021800 [exp]	7.48	0.7314
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.003G156900 [exp]	8.36	0.7439
AT4G26490			Late embryogenesis abundant (L...		Potri.001G468400 [exp]	9.48	0.7056
AT3G62930			Thioredoxin superfamily protei...		Potri.002G208700 [exp]	11.95	0.6813	PtrGrx20

Compare expression of checked genes

Potri.019G133600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.